Mercurial > repos > ktnyt > gembassy
comparison glang-galaxy-conf/kbws/kglimmer.xml @ 2:8947fca5f715 draft default tip
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| author | ktnyt |
|---|---|
| date | Fri, 26 Jun 2015 05:21:44 -0400 |
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| 1:84a17b3fad1f | 2:8947fca5f715 |
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| 1 <tool id="EMBOSS: kglimmer" name="kglimmer" version="1.0.2"> | |
| 2 <description>Finds genes in prokaryotic genomes using Glimmer</description> | |
| 3 <command>kglimmer -seqall $input1 -topology $topology -gencode $gencode -auto -outfile $out_file1</command> | |
| 4 <inputs> | |
| 5 <param format="data" name="input1" type="data"> | |
| 6 <label>Sequence</label> | |
| 7 </param> | |
| 8 <param name="topology" size="4" type="text" value="circular"> | |
| 9 <label>Genome topology ('circular' or 'linear')</label> | |
| 10 </param> | |
| 11 <param name="gencode" size="4" type="integer" value="11"> | |
| 12 <label>Genetic code. '11': Bacteria or Archaea, '4': Mycoplasma/Spiroplasma</label> | |
| 13 </param> | |
| 14 | |
| 15 </inputs> | |
| 16 <outputs> | |
| 17 <data format="txt" name="out_file1" label="${tool.name} for ${input1.name}" /> | |
| 18 </outputs> | |
| 19 </tool> |