Mercurial > repos > ktnyt > gembassy
comparison GEMBASSY-1.0.3/acd/gdistincc.acd @ 2:8947fca5f715 draft default tip
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| author | ktnyt |
|---|---|
| date | Fri, 26 Jun 2015 05:21:44 -0400 |
| parents | 84a17b3fad1f |
| children |
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| 1:84a17b3fad1f | 2:8947fca5f715 |
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| 1 application: gdistincc [ | |
| 2 documentation: "Calculates the distance between two loci in circular chromosomes" | |
| 3 groups: "Nucleic:Composition" | |
| 4 embassy: "gembassy" | |
| 5 relations: "EDAM_topic:3073 Nucleic acid feature detection" | |
| 6 relations: "EDAM_operation:0415 Nucleic acid feature prediction" | |
| 7 ] | |
| 8 | |
| 9 section: input [ | |
| 10 information: "Input section" | |
| 11 type: "page" | |
| 12 ] | |
| 13 | |
| 14 seqall: sequence [ | |
| 15 parameter: "Y" | |
| 16 type: "nucleotide" | |
| 17 features: "Y" | |
| 18 relations: "EDAM_data:0849 Sequence record" | |
| 19 ] | |
| 20 | |
| 21 integer: first [ | |
| 22 parameter: "Y" | |
| 23 information: "Position to find the distance" | |
| 24 ] | |
| 25 | |
| 26 boolean: accid [ | |
| 27 information: "Include to use sequence accession ID as query" | |
| 28 default: "Y" | |
| 29 ] | |
| 30 | |
| 31 endsection: input | |
| 32 | |
| 33 section: advanced [ | |
| 34 information: "Advanced section" | |
| 35 type: "page" | |
| 36 ] | |
| 37 | |
| 38 integer: second [ | |
| 39 information: "If the second position is negative, position of replication origin is used" | |
| 40 default: "-1" | |
| 41 ] | |
| 42 | |
| 43 endsection: advanced | |
| 44 | |
| 45 section: output [ | |
| 46 information: "Output section" | |
| 47 type: "page" | |
| 48 ] | |
| 49 | |
| 50 outfile: outfile [ | |
| 51 parameter: "Y" | |
| 52 relations: "EDAM_data:3127 Nucleic acid features (replication and | |
| 53 recombination)" | |
| 54 ] | |
| 55 | |
| 56 endsection: output |