comparison GEMBASSY-1.0.3/acd/gfop.acd @ 2:8947fca5f715 draft default tip

Uploaded
author ktnyt
date Fri, 26 Jun 2015 05:21:44 -0400
parents 84a17b3fad1f
children
comparison
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1:84a17b3fad1f 2:8947fca5f715
1 application: gfop [
2 documentation: "Calculates the frequency of optimal codons (Fop)"
3 groups: "Nucleic:Codon Usage"
4 embassy: "gembassy"
5 relations: "EDAM_operation:0286 Codon usage analysis"
6 relations: "EDAM_topic:0107 Codon usage analysis"
7 ]
8
9 section: input [
10 information: "Input section"
11 type: "page"
12 ]
13
14 seqall: sequence [
15 parameter: "Y"
16 type: "nucleotide"
17 features: "Y"
18 relations: "EDAM_data:0849 Sequence record"
19 ]
20
21 endsection: input
22
23 section: advanced [
24 information: "Advanced section"
25 type: "page"
26 ]
27
28 boolean: translate [
29 information: "Include when translates using standard codon table"
30 default: "N"
31 ]
32
33 boolean: accid [
34 information: "Include to use sequence accession ID as query"
35 default: "N"
36 ]
37
38 endsection: advanced
39
40 section: output [
41 information: "Output section"
42 type: "page"
43 ]
44
45 outfile: outfile [
46 parameter: "Y"
47 information: "Codon usage output file"
48 knowntype: "codon usage"
49 relations: "EDAM_data:2865 Codon usage bias"
50 ]
51
52 endsection: output