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comparison GEMBASSY-1.0.3/acd/gldabias.acd @ 2:8947fca5f715 draft default tip

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author ktnyt
date Fri, 26 Jun 2015 05:21:44 -0400
parents 84a17b3fad1f
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1:84a17b3fad1f 2:8947fca5f715
1 application: gldabias [
2 documentation: "Calculates strand bias of bacterial genome using linear
3 discriminant analysis (LDA)"
4 groups: "Nucleic:Composition"
5 embassy: "gembassy"
6 relations: "EDAM_topic:0157 Sequence composition analysis"
7 relations: "EDAM_operation:0377 Sequence composition calculation
8 (nucleic acid)"
9 ]
10
11 section: input [
12 information: "Input section"
13 type: "page"
14 ]
15
16 seqall: sequence [
17 parameter: "Y"
18 type: "nucleotide"
19 features: "Y"
20 relations: "EDAM_data:0849 Sequence record"
21 ]
22
23 endsection: input
24
25 section: advanced [
26 information: "Advanced section"
27 type: "page"
28 ]
29
30 integer: coefficients [
31 information: "Show LDA coefficients"
32 default: "0"
33 ]
34
35 selection: variable [
36 information: "Data to use for LDA. Either 'base', 'codonbase', 'codon', or
37 'amino'"
38 values: "base;codonbase;codon;amino"
39 default: "codon"
40 ]
41
42 boolean: accid [
43 information: "Include to use sequence accession ID as query"
44 default: "N"
45 ]
46
47 endsection: advanced
48
49 section: output [
50 information: "Output section"
51 type: "page"
52 ]
53
54 outfile: outfile [
55 parameter: "Y"
56 information: "Program compseq output file"
57 knowntype: "compseq output"
58 relations: "EDAM_data:3086 Nucleic acid sequence composition"
59 ]
60
61 endsection: output