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comparison GEMBASSY-1.0.3/acd/gsignature.acd @ 2:8947fca5f715 draft default tip

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author ktnyt
date Fri, 26 Jun 2015 05:21:44 -0400
parents 84a17b3fad1f
children
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1:84a17b3fad1f 2:8947fca5f715
1 application: gsignature [
2 documentation: "Calculates oligonucleotide usage (genomic signature)"
3 groups: "Nucleic:Composition"
4 embassy: "gembassy"
5 relations: "EDAM_topic:0157 Sequence composition analysis"
6 relations: "EDAM_operation:0377 Sequence composition calculation
7 (nucleic acid)"
8 ]
9
10 section: input [
11 information: "Input section"
12 type: "page"
13 ]
14
15 seqall: sequence [
16 parameter: "Y"
17 type: "nucleotide"
18 features: "Y"
19 relations: "EDAM_data:0849 Sequence record"
20 ]
21
22 endsection: input
23
24 section: advanced [
25 information: "Advanced section"
26 type: "page"
27 ]
28
29 integer: wordlength [
30 information: "Word length"
31 default: "2"
32 ]
33
34 boolean: bothstrand [
35 information: "Include to use both strands direct used otherwise"
36 default: "Y"
37 ]
38
39 boolean: oe [
40 information: "Use observed (0) or O/E (1) value"
41 information: "Include to use O/E value observed values used otherwise"
42 default: "Y"
43 ]
44
45 boolean: accid [
46 information: "Include to use sequence accession ID as query"
47 default: "N"
48 ]
49
50 endsection: advanced
51
52 section: output [
53 information: "Output section"
54 type: "page"
55 ]
56
57 outfile: outfile [
58 parameter: "Y"
59 information: "Program compseq output file"
60 knowntype: "compseq output"
61 relations: "EDAM_data:3086 Nucleic acid sequence composition"
62 ]
63
64 endsection: output