comparison GEMBASSY-1.0.3/src/gpalindrome.c @ 2:8947fca5f715 draft default tip

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author ktnyt
date Fri, 26 Jun 2015 05:21:44 -0400
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1:84a17b3fad1f 2:8947fca5f715
1 /******************************************************************************
2 ** @source gpalindrome
3 **
4 ** Searches palindrome sequences
5 **
6 ** @author Copyright (C) 2012 Hidetoshi Itaya
7 ** @version 1.0.3
8 ** @modified 2012/1/20 Hidetoshi Itaya Created!
9 ** @modified 2013/6/16 Revision 1
10 ** @modified 2015/2/7 Refactor
11 ** @@
12 **
13 ** This program is free software; you can redistribute it and/or
14 ** modify it under the terms of the GNU General Public License
15 ** as published by the Free Software Foundation; either version 2
16 ** of the License, or (at your option) any later version.
17 **
18 ** This program is distributed in the hope that it will be useful,
19 ** but WITHOUT ANY WARRANTY; without even the implied warranty of
20 ** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
21 ** GNU General Public License for more details.
22 **
23 ** You should have received a copy of the GNU General Public License
24 ** along with this program; if not, write to the Free Software
25 ** Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
26 ******************************************************************************/
27
28 #include "emboss.h"
29 #include "soapH.h"
30 #include "GLANGSoapBinding.nsmap"
31 #include "soapClient.c"
32 #include "soapC.c"
33 #include "../gsoap/stdsoap2.c"
34 #include "glibs.h"
35
36
37
38
39 /* @prog gpalindrome **********************************************************
40 **
41 ** Searches palindrome sequences
42 **
43 ******************************************************************************/
44
45 int main(int argc, char *argv[])
46 {
47 embInitPV("gpalindrome", argc, argv, "GEMBASSY", "1.0.3");
48
49 struct soap soap;
50 struct ns1__palindromeInputParams params;
51
52 AjPSeqall seqall;
53 AjPSeq seq;
54 AjPStr inseq = NULL;
55 AjPStr seqid = NULL;
56 ajint shortest = 0;
57 ajint loop = 0;
58 AjBool gtmatch = 0;
59
60 char *in0;
61 char *result;
62
63 AjPFile outf = NULL;
64
65 seqall = ajAcdGetSeqall("sequence");
66 shortest = ajAcdGetInt("shortest");
67 loop = ajAcdGetInt("loop");
68 gtmatch = ajAcdGetBoolean("gtmatch");
69 outf = ajAcdGetOutfile("outfile");
70
71 params.shortest = shortest;
72 params.loop = loop;
73 params.gtmatch = gtmatch;
74 params.output = "f";
75
76 while(ajSeqallNext(seqall, &seq))
77 {
78 soap_init(&soap);
79
80 inseq = NULL;
81
82 ajStrAppendC(&inseq, ">");
83 ajStrAppendS(&inseq, ajSeqGetNameS(seq));
84 ajStrAppendC(&inseq, "\n");
85 ajStrAppendS(&inseq, ajSeqGetSeqS(seq));
86
87 ajStrAssignS(&seqid, ajSeqGetAccS(seq));
88
89 in0 = ajCharNewS(inseq);
90
91 if(soap_call_ns1__palindrome(
92 &soap,
93 NULL,
94 NULL,
95 in0,
96 &params,
97 &result
98 ) == SOAP_OK)
99 {
100 ajFmtPrintF(outf, "Sequence: %S\n", seqid);
101
102 if(!gFileOutURLC(result, &outf))
103 {
104 ajDie("File downloading error from:\n%s\n", result);
105 embExitBad();
106 }
107 }
108 else
109 {
110 soap_print_fault(&soap, stderr);
111 }
112
113 soap_destroy(&soap);
114 soap_end(&soap);
115 soap_done(&soap);
116
117 AJFREE(in0);
118
119 ajStrDel(&inseq);
120 }
121
122 ajFileClose(&outf);
123
124 ajSeqallDel(&seqall);
125 ajSeqDel(&seq);
126 ajStrDel(&seqid);
127
128 embExit();
129
130 return 0;
131 }