--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GEMBASSY-1.0.3/configure.in	Fri Jun 26 05:19:29 2015 -0400
@@ -0,0 +1,1012 @@
+#                                               -*- Autoconf -*-
+# Configure template for the EMBOSS package.
+# Process this file with autoconf to produce a configure script.
+
+AC_PREREQ([2.64])
+AC_INIT([GEMBASSY],
+[1.0.3],
+[celery@g-language.org],
+[GEMBASSY],
+[http://www.g-language.org/gembassy/])
+AC_REVISION([$Revision: 1.35 $])
+AC_CONFIG_SRCDIR([src/ggcskew.c])
+AC_CONFIG_HEADERS([src/config.h])
+AC_CONFIG_MACRO_DIR([m4])
+
+# Make sure CFLAGS is defined to stop AC_PROG_CC adding -g.
+CFLAGS="${CFLAGS} "
+
+# Checks for programs.
+AC_PROG_AWK
+AC_PROG_CC([icc gcc cc])
+AC_PROG_CXX([icpc g++])
+AC_PROG_CPP
+AC_PROG_INSTALL
+AC_PROG_LN_S
+AC_PROG_MAKE_SET
+AC_PROG_MKDIR_P
+
+AM_INIT_AUTOMAKE
+
+# Use libtool to make a shared library.
+LT_INIT
+
+
+
+
+# Check if 64 bit pointer support is required on 32 bit machines
+# Disabled by default
+
+AC_ARG_ENABLE([64],
+[AS_HELP_STRING([--enable-64], [64 bit pointers on 32 bit machines])])
+
+AS_IF([test "x${enable_64}" = "xyes"],
+[
+  AC_MSG_CHECKING([for 64bit compilation support])
+
+  AS_CASE([${host_os}],
+  [aix*],
+  [
+    CPPFLAGS="-DAJ_AIX64 ${CPPFLAGS}"
+    AS_CASE([${CC}],
+    [gcc],
+    [],
+    [
+      AS_VAR_APPEND([CC], [" -q64"])
+    ])
+    NM="nm -B -X 64"
+    AR="ar -X 64"
+  ],
+  [hpux*],
+  [
+    AS_CASE([${CC}],
+    [gcc],
+    [],
+    [
+      AS_VAR_APPEND([CC], [" +DD64"])
+    ])
+    AC_DEFINE([HPUX64PTRS], [1], [Set to 1 if HPUX 64bit ptrs on 32 bit m/c])
+  ])
+  AC_MSG_RESULT([done])
+])
+
+
+
+
+# Compiler optimisations
+# The Solaris 64bit ptr check has to be done here owing to param order
+
+AC_ARG_WITH([optimisation],
+[AS_HELP_STRING([--without-optimisation], [Disable compiler optimisation])])
+
+AS_IF([test "x${with_optimisation}" != "xno"],
+[
+  AS_CASE([${CC}],
+  [gcc],
+  [
+    # Intel MacOSX requires reduced optimisation for PCRE code
+    # other OSs just use -O2
+    AS_CASE([${host_os}],
+    [darwin*],
+    [
+      AS_IF([test "x${host_cpu}" = "xi386"],
+      [AS_VAR_APPEND([CFLAGS], [" -O1"])],
+      [AS_VAR_APPEND([CFLAGS], [" -O2"])])
+    ],
+    [
+      AS_VAR_APPEND([CFLAGS], [" -O2"])
+    ])
+  ],
+  [
+    AS_CASE([${host_os}],
+    [aix*],
+    [
+      AS_VAR_APPEND([CFLAGS], [" -O3 -qstrict -qarch=auto -qtune=auto"])
+    ],
+    [irix*],
+    [
+      LD="/usr/bin/ld -IPA"
+      AS_VAR_APPEND([CFLAGS], [" -O3"])
+    ],
+    [hpux*],
+    [
+      AS_VAR_APPEND([CFLAGS], [" -fast"])
+    ],
+    [osf*],
+    [
+      AS_VAR_APPEND([CFLAGS], [" -fast -U_FASTMATH"])
+    ],
+    [solaris*],
+    [
+      AS_VAR_APPEND([CFLAGS], [" -O"])
+      # test for 64 bit ptr here (see Solaris 64bit above)
+      AS_IF([test "x${enable_64}" = "xyes"],
+      [AS_VAR_APPEND([CFLAGS], [" -xtarget=ultra -xarch=v9"])])
+    ],
+    [linux*],
+    [
+      # Default optimisation for non-gcc compilers under Linux
+      AS_VAR_APPEND([CFLAGS], [" -O2"])
+    ],
+    [freebsd*],
+    [
+      AS_VAR_APPEND([CFLAGS], [" -O2"])
+    ])
+  ])
+])
+
+
+
+
+# Compiler warning settings: --enable-warnings, defines WARN_CFLAGS
+
+AC_ARG_ENABLE([warnings],
+[AS_HELP_STRING([--enable-warnings], [compiler warnings])])
+
+AS_IF([test "x${enable_warnings}" = "xyes"],
+[
+  AS_CASE([${CC}],
+  [gcc],
+  [
+    # -Wall priovides:
+    #    -Waddress
+    #    -Warray-bounds (only with -O2)
+    #    -Wc++0x-compat
+    #    -Wchar-subscripts
+    #    -Wenum-compare (in C/Objc; this is on by default in C++)
+    #    -Wimplicit-int (C and Objective-C only)
+    #    -Wimplicit-function-declaration (C and Objective-C only)
+    #    -Wcomment
+    #    -Wformat
+    #    -Wmain (only for C/ObjC and unless -ffreestanding)
+    #    -Wmissing-braces
+    #    -Wnonnull
+    #    -Wparentheses
+    #    -Wpointer-sign
+    #    -Wreorder
+    #    -Wreturn-type
+    #    -Wsequence-point
+    #    -Wsign-compare (only in C++)
+    #    -Wstrict-aliasing
+    #    -Wstrict-overflow=1
+    #    -Wswitch
+    #    -Wtrigraphs
+    #    -Wuninitialized
+    #    -Wunknown-pragmas
+    #    -Wunused-function
+    #    -Wunused-label
+    #    -Wunused-value
+    #    -Wunused-variable
+    #    -Wvolatile-register-var
+
+    AS_VAR_SET([WARN_CFLAGS], ["-Wall -fno-strict-aliasing"])
+  ])
+])
+
+AC_SUBST([WARN_CFLAGS])
+
+
+
+
+# Compiler developer warning settings: --enable-devwarnings,
+# sets DEVWARN_CFLAGS
+
+AC_ARG_ENABLE([devwarnings],
+[AS_HELP_STRING([--enable-devwarnings],
+[strict compiler warnings for developers])])
+
+AS_IF([test "x${enable_devwarnings}" = "xyes"],
+[
+  AS_CASE([${CC}],
+  [gcc],
+  [
+    # Only -Wstrict-prototypes and -Wmissing-prototypes are set in this
+    # EMBASSY module.
+
+    AS_VAR_SET([DEVWARN_CFLAGS], ["-Wstrict-prototypes -Wmissing-prototypes"])
+
+    # Diagnostic options for the GNU GCC compiler version 4.6.1.
+    # http://gcc.gnu.org/onlinedocs/gcc-4.6.1/gcc/Warning-Options.html
+    #
+    # -Wextra: more warnings beyond what -Wall provides
+    #    -Wclobbered
+    #    -Wempty-body
+    #    -Wignored-qualifiers
+    #    -Wmissing-field-initializers
+    #    -Wmissing-parameter-type (C only)
+    #    -Wold-style-declaration (C only)
+    #    -Woverride-init
+    #    -Wsign-compare
+    #    -Wtype-limits
+    #    -Wuninitialized
+    #    -Wunused-parameter (only with -Wunused or -Wall)
+    #    -Wunused-but-set-parameter (only with -Wunused or -Wall)
+
+    # AS_VAR_SET([DEVWARN_CFLAGS], ["-Wextra"])
+
+    # Warn if a function is declared or defined without specifying the
+    # argument types.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wstrict-prototypes"])
+
+    # Warn if a global function is defined without a previous prototype
+    # declaration.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wmissing-prototypes"])
+
+    # Warn for obsolescent usages, according to the C Standard,
+    # in a declaration.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wold-style-definition"])
+
+    # Warn if a global function is defined without a previous declaration.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wmissing-declarations"])
+
+    # When compiling C, give string constants the type const char[length]
+    # so that copying the address of one into a non-const char * pointer
+    # will get a warning.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wwrite-strings"])
+
+    # Warn whenever a local variable or type declaration shadows another
+    # variable, parameter, type, or class member (in C++), or whenever a
+    # built-in function is shadowed.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wshadow"])
+
+    # Warn when a declaration is found after a statement in a block.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wdeclaration-after-statement"])
+
+    # Warn if an undefined identifier is evaluated in an `#if' directive.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wundef"])
+
+    # Warn about anything that depends on the "size of" a function type
+    # or of void.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wpointer-arith"])
+
+    # Warn whenever a pointer is cast so as to remove a type qualifier
+    # from the target type.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wcast-qual"])
+
+    # Warn whenever a pointer is cast such that the required alignment
+    # of the target is increased.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wcast-align"])
+
+    # Warn whenever a function call is cast to a non-matching type.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wbad-function-cast"])
+
+    # Warn when a comparison between signed and unsigned values could
+    # produce an incorrect result when the signed value is converted to
+    # unsigned.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wsign-compare"])
+
+    # Warn if a structure's initializer has some fields missing.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wmissing-field-initializers"])
+
+    # An alias of the new option -Wsuggest-attribute=noreturn
+    # Warn for cases where adding an attribute may be beneficial.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wmissing-noreturn"])
+
+    # Warn if an extern declaration is encountered within a function.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wnested-externs"])
+
+    # Warn if anything is declared more than once in the same scope,
+    # even in cases where multiple declaration is valid and changes
+    # nothing.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wredundant-decls"])
+
+    # Warn if the loop cannot be optimized because the compiler could not
+    # assume anything on the bounds of the loop indices.
+    # -Wunsafe-loop-optimizations objects to loops with increments more
+    # than 1 because if the end is at INT_MAX it could run forever ...
+    # rarely
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wunsafe-loop-optimizations"])
+
+    # Warn for implicit conversions that may alter a value.
+    # -Wconversion is brain-damaged - complains about char arguments
+    # every time
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wconversion"])
+
+    # Warn about certain constructs that behave differently in traditional
+    # and ISO C.
+    # -Wtraditional gives #elif and #error msgs
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wtraditional"])
+
+    # Warn if floating point values are used in equality comparisons.
+    # -Wfloat-equal will not allow tests for values still 0.0
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wfloat-equal"])
+
+    # This option is only active when -ftree-vrp is active
+    # (default for -O2 and above). It warns about subscripts to arrays
+    # that are always out of bounds.
+    # -Warray-bounds gives false positives in gcc 4.6.0
+    # Disable rather than use a non-portable pragma
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wno-array-bounds"])
+  ],
+  [icc],
+  [
+    # Diagnostic options for the Intel(R) C++ compiler version 11.1.
+    # http://software.intel.com/en-us/articles/intel-c-compiler-professional-edition-for-linux-documentation/
+
+    # This option specifies the level of diagnostic messages to be
+    # generated by the compiler.
+
+    AS_VAR_SET([DEVWARN_CFLAGS], ["-w2"])
+
+    # This option determines whether a warning is issued if generated
+    # code is not C++ ABI compliant.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wabi"])
+
+    # This option tells the compiler to display errors, warnings, and
+    # remarks.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wall"])
+
+    # This option tells the compiler to display a shorter form of
+    # diagnostic output.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wbrief"])
+
+    # This option warns if cast is used to override pointer type
+    # qualifier
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wcast-qual"])
+
+    # This option tells the compiler to perform compile-time code
+    # checking for certain code.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wcheck"])
+
+    # This option determines whether a warning is issued when /*
+    # appears in the middle of a /* */ comment.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wcomment"])
+
+    # Set maximum number of template instantiation contexts shown in
+    # diagnostic.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wcontext-limit=n"])
+
+    # This option enables warnings for implicit conversions that may
+    # alter a value.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wconversion"])
+
+    # This option determines whether warnings are issued for deprecated
+    # features.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wdeprecated"])
+
+    # This option enables warnings based on certain C++ programming
+    # guidelines.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Weffc++"])
+
+    # This option changes all warnings to errors.
+    # Alternate: -diag-error warn
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Werror"])
+
+    # This option changes all warnings and remarks to errors.
+    # Alternate: -diag-error warn, remark
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Werror-all"])
+
+    # This option determines whether warnings are issued about extra
+    # tokens at the end of preprocessor directives.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wextra-tokens"])
+
+    # This option determines whether argument checking is enabled for
+    # calls to printf, scanf, and so forth.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wformat"])
+
+    # This option determines whether the compiler issues a warning when
+    # the use of format functions may cause security problems.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wformat-security"])
+
+    # This option enables diagnostics about what is inlined and what is
+    # not inlined.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Winline"])
+
+    # This option determines whether a warning is issued if the return
+    # type of main is not expected.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wmain"])
+
+    # This option determines whether warnings are issued for global
+    # functions and variables without prior declaration.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wmissing-declarations"])
+
+    # Determines whether warnings are issued for missing prototypes.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wmissing-prototypes"])
+
+    # This option enables warnings if a multicharacter constant
+    # ('ABC') is used.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wmultichar"])
+
+    # Issue a warning when a class appears to be polymorphic,
+    # yet it declares a non-virtual one.
+    # This option is supported in C++ only.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wnon-virtual-dtor"])
+
+    # This option warns about operations that could result in
+    # integer overflow.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Woverflow"])
+
+    # This option tells the compiler to display diagnostics for 64-bit
+    # porting.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wp64"])
+
+    # Determines whether warnings are issued for questionable pointer
+    # arithmetic.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wpointer-arith"])
+
+    # his option determines whether a warning is issued about the
+    # use of #pragma once.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wpragma-once"])
+
+    # Issue a warning when the order of member initializers does not
+    # match the order in which they must be executed.
+    # This option is supported with C++ only.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wreorder"])
+
+    # This option determines whether warnings are issued when a function
+    # uses the default int return type or when a return statement is
+    # used in a void function.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wreturn-type"])
+
+    # This option determines whether a warning is issued when a variable
+    # declaration hides a previous declaration.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wshadow"])
+
+    # This option warns for code that might violate the optimizer's
+    # strict aliasing rules. Warnings are issued only when using
+    # -fstrict-aliasing or -ansi-alias.
+
+    # AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wstrict-aliasing"])
+
+    # This option determines whether warnings are issued for functions
+    # declared or defined without specified argument types.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wstrict-prototypes"])
+
+    # This option determines whether warnings are issued if any trigraphs
+    # are encountered that might change the meaning of the program.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wtrigraphs"])
+
+    # This option determines whether a warning is issued if a variable
+    # is used before being initialized.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wuninitialized"])
+
+    # This option determines whether a warning is issued if an unknown
+    # #pragma directive is used.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wunknown-pragmas"])
+
+    # This option determines whether a warning is issued if a declared
+    # function is not used.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wunused-function"])
+
+    # This option determines whether a warning is issued if a local or
+    # non-constant static variable is unused after being declared.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wunused-variable"])
+
+    # This option issues a diagnostic message if const char* is
+    # converted to (non-const) char *.
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wwrite-strings"])
+
+    # Disable warning #981 operands are evaluated in unspecified order
+    # http://software.intel.com/en-us/articles/cdiag981/
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -diag-disable 981"])
+  ])
+])
+
+AC_SUBST([DEVWARN_CFLAGS])
+
+
+
+
+# Compiler extra developer warning settings: --enable-devextrawarnings,
+# appends DEVWARN_CFLAGS
+# Will only have an effect if --enable-devwarnings also given
+
+AC_ARG_ENABLE([devextrawarnings],
+[AS_HELP_STRING([--enable-devextrawarnings],
+[add extra warnings to devwarnings])])
+
+AS_IF([test "x${enable_devwarnings}" = "xyes" &&
+       test "x${enable_devextrawarnings}" = "xyes"],
+[
+  AS_CASE([${CC}],
+  [gcc],
+  [
+    # flags used by Ubuntu 8.10 to check open has 2/3 arguments etc.
+
+    AC_DEFINE([_FORTIFY_SOURCE], [2], [Set to 2 for open args])
+
+    # compiler flags
+
+    CPPFLAGS="-fstack-protector ${CPPFLAGS}"
+
+    # warnings used by Ubuntu 8.10
+    # -Wall already includes:
+    #           -Wformat
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wformat-security -Wl,-z,relro"])
+
+    # -Wpadded means moving char to end of structs - but also flags
+    #  end of struct so need to add padding at end
+
+    AS_VAR_APPEND([DEVWARN_CFLAGS], [" -Wpadded"])
+  ])
+])
+
+
+
+
+# Compile deprecated functions still used in the book text for 6.2.0
+
+AC_ARG_ENABLE([buildbookdeprecated],
+[AS_HELP_STRING([--enable-buildbookdeprecated],
+[build deprecated functions used in books for 6.2.0])])
+
+# Compile all deprecated functions
+
+AC_ARG_ENABLE([buildalldeprecated],
+[AS_HELP_STRING([--enable-buildalldeprecated],
+[build all deprecated functions])])
+
+AS_IF([test "x${enable_buildbookdeprecated}" = "xyes" ||
+       test "x${enable_buildalldeprecated}" = "xyes"],
+[
+  AC_DEFINE([AJ_COMPILE_DEPRECATED_BOOK], [1],
+  [Define to 1 to compile deprecated functions used in book texts for 6.2.0])
+])
+
+AS_IF([test "x${enable_buildalldeprecated}" = "xyes"],
+[
+  AC_DEFINE([AJ_COMPILE_DEPRECATED], [1],
+  [Define to 1 to compile all deprecated functions])
+])
+
+
+
+
+# Add extensions to Solaris for some reentrant functions
+
+AS_CASE([${host_os}],
+[solaris*],
+[AS_VAR_APPEND([CFLAGS], [" -D__EXTENSIONS__"])])
+
+
+
+
+# Test whether --with-sgiabi given for IRIX (n32m3 n32m4 64m3 64m4)
+
+AS_CASE([${host_os}],
+[irix*],
+[
+  AS_CASE([${CC}],
+  [gcc],
+  [],
+  [cc],
+  [CHECK_SGI])
+])
+
+
+
+
+dnl PCRE library definitions - see the MAJOR and MINOR values
+dnl to see which version's configure.in these lines come from
+
+dnl Provide the current PCRE version information. Do not use numbers
+dnl with leading zeros for the minor version, as they end up in a C
+dnl macro, and may be treated as octal constants. Stick to single
+dnl digits for minor numbers less than 10. There are unlikely to be
+dnl that many releases anyway.
+
+PCRE_MAJOR="7"
+PCRE_MINOR="9"
+PCRE_DATE="11-Apr-2009"
+PCRE_VERSION="${PCRE_MAJOR}.${PCRE_MINOR}"
+
+dnl Default values for miscellaneous macros
+
+POSIX_MALLOC_THRESHOLD="-DPOSIX_MALLOC_THRESHOLD=10"
+
+dnl Provide versioning information for libtool shared libraries that
+dnl are built by default on Unix systems.
+
+PCRE_LIB_VERSION="0:1:0"
+PCRE_POSIXLIB_VERSION="0:0:0"
+
+
+
+
+dnl FIXME: This does no longer seem required with Autoconf 2.67?
+dnl Intel MacOSX 10.6 puts X11 in a non-standard place
+dnl AS_IF([test "x${with_x}" != "xno"],
+dnl [
+dnl   AS_CASE([${host_os}],
+dnl   [darwin*],
+dnl   [
+dnl     OSXX=`sw_vers -productVersion | sed 's/\(10\.[[0-9]]*\).*/\1/'`
+dnl     AS_IF([test ${OSXX} '>' '10.4'],
+dnl     [AS_VAR_APPEND([CFLAGS], [" -I/usr/X11/include -L/usr/X11/lib"])])
+dnl   ])
+dnl ])
+
+
+
+
+# Checks for header files.
+AC_PATH_XTRA
+AC_HEADER_DIRENT
+AC_HEADER_STDC
+
+AC_CHECK_HEADERS([unistd.h TargetConfig.h])
+
+
+# Checks for typedefs, structures, and compiler characteristics.
+AC_C_BIGENDIAN
+AC_C_CONST
+AC_C_INLINE
+AC_TYPE_PID_T
+AC_TYPE_SIZE_T
+AC_STRUCT_TM
+
+
+# Checks for library functions.
+AC_FUNC_GETPGRP
+AC_FUNC_STRFTIME
+AC_FUNC_FORK
+AC_FUNC_VPRINTF
+
+AC_CHECK_FUNCS([strdup strstr strchr erand48 memmove])
+
+AS_IF([test "x${with_x}" != "xno"], [LF_EMBOSS_PATH_XLIB])
+
+
+# Library checks.
+AC_CHECK_LIB([c], [socket], [LIBS="${LIBS}"], [LIBS="${LIBS} -lsocket"])
+AC_CHECK_LIB([m], [main])
+AC_CHECK_LIB([curl], [curl_easy_init], [],
+[AC_MSG_ERROR([You need to install libcurl-devel library to your system])])
+
+# GD for FreeBSD requires libiconv
+
+AS_CASE([${host_os}],
+[freebsd*],
+[
+  AS_IF([test "x${with_pngdriver}" != "xno"],
+  [AC_CHECK_LIB([iconv], [main], [LIBS="${LIBS}"], [LIBS="-liconv ${LIBS}"])])
+])
+
+
+
+
+AM_CONDITIONAL([AMPNG], [false])
+AM_CONDITIONAL([AMPDF], [false])
+
+CHECK_GENERAL
+CHECK_JAVA
+CHECK_HPDF
+CHECK_PNGDRIVER
+
+AX_LIB_MYSQL
+AX_LIB_POSTGRESQL
+
+
+
+
+dnl "Export" these variables for PCRE
+
+AC_SUBST([HAVE_MEMMOVE])
+AC_SUBST([HAVE_STRERROR])
+AC_SUBST([PCRE_MAJOR])
+AC_SUBST([PCRE_MINOR])
+AC_SUBST([PCRE_DATE])
+AC_SUBST([PCRE_VERSION])
+AC_SUBST([PCRE_LIB_VERSION])
+AC_SUBST([PCRE_POSIXLIB_VERSION])
+AC_SUBST([POSIX_MALLOC_THRESHOLD])
+
+
+
+
+dnl Test if --enable-localforce given
+locallink="no"
+embprefix="/usr/local"
+AC_ARG_ENABLE([localforce],
+  [AS_HELP_STRING([--enable-localforce],
+  [force compile/link against /usr/local])])
+
+AS_IF([test "x${enable_localforce}" = "xyes"],
+[embprefix="/usr/local"])
+
+AS_IF([test "x${prefix}" = "xNONE"],
+[
+    AS_IF([test "x${enable_localforce}" != "xyes"],
+    [locallink="yes"],
+    [
+        locallink="no"
+        embprefix="/usr/local"
+    ])
+],
+[
+    embprefix="${prefix}"
+])
+
+AM_CONDITIONAL([LOCALLINK], [test "x${locallink}" = "xyes"])
+
+AC_SUBST([embprefix])
+
+
+
+
+# Enable debugging: --enable-debug, sets CFLAGS
+
+AC_ARG_ENABLE([debug],
+[AS_HELP_STRING([--enable-debug], [debug (-g option on compiler)])])
+
+AS_IF([test "x${enable_debug}" = "xyes"], [AS_VAR_APPEND([CFLAGS], [" -g"])])
+
+
+
+
+# Turn off irritating linker warnings in IRIX
+
+AS_CASE([${host_os}],
+[irix*],
+[
+  CFLAGS="-Wl,-LD_MSG:off=85:off=84:off=16:off=134 ${CFLAGS}"
+])
+
+
+
+
+# Enable the large file interface: --enable-large, appends CPPFLAGS
+
+AC_ARG_ENABLE([large],
+[AS_HELP_STRING([--enable-large],
+[over 2Gb file support @<:@default=yes@:>@])])
+
+AC_MSG_CHECKING([for large file support])
+
+AS_IF([test "x${enable_large}" = "xno"],
+[
+  AC_MSG_RESULT([no])
+],
+[
+  AS_CASE([${host_os}],
+  [linux*],
+  [
+    AS_VAR_APPEND([CPPFLAGS], [" -DAJ_LinuxLF"])
+    AS_VAR_APPEND([CPPFLAGS], [" -D_LARGEFILE_SOURCE"])
+    AS_VAR_APPEND([CPPFLAGS], [" -D_LARGEFILE64_SOURCE"])
+    AS_VAR_APPEND([CPPFLAGS], [" -D_FILE_OFFSET_BITS=64"])
+  ],
+  [freebsd*],
+  [
+    AS_VAR_APPEND([CPPFLAGS], [" -DAJ_FreeBSDLF"])
+  ],
+  [solaris*],
+  [
+    AS_VAR_APPEND([CPPFLAGS], [" -DAJ_SolarisLF"])
+    AS_VAR_APPEND([CPPFLAGS], [" -D_LARGEFILE_SOURCE"])
+    AS_VAR_APPEND([CPPFLAGS], [" -D_FILE_OFFSET_BITS=64"])
+  ],
+  [osf*],
+  [
+    AS_VAR_APPEND([CPPFLAGS], [" -DAJ_OSF1LF"])
+  ],
+  [irix*],
+  [
+    AS_VAR_APPEND([CPPFLAGS], [" -DAJ_IRIXLF"])
+    AS_VAR_APPEND([CPPFLAGS], [" -D_LARGEFILE64_SOURCE"])
+  ],
+  [aix*],
+  [
+    AS_VAR_APPEND([CPPFLAGS], [" -DAJ_AIXLF"])
+    AS_VAR_APPEND([CPPFLAGS], [" -D_LARGE_FILES"])
+  ],
+  [hpux*],
+  [
+    AS_VAR_APPEND([CPPFLAGS], [" -DAJ_HPUXLF"])
+    AS_VAR_APPEND([CPPFLAGS], [" -D_LARGEFILE_SOURCE"])
+    AS_VAR_APPEND([CPPFLAGS], [" -D_FILE_OFFSET_BITS=64"])
+  ],
+  [darwin*],
+  [
+    AS_VAR_APPEND([CPPFLAGS], [" -DAJ_MACOSXLF"])
+  ])
+
+  AC_MSG_RESULT([yes])
+])
+
+
+
+
+# Enable libraries provided by the system rather than EMBOSS:
+# --enable-systemlibs, sets ESYSTEMLIBS
+
+AC_ARG_ENABLE([systemlibs],
+[AS_HELP_STRING([--enable-systemlibs], [utility for RPM/dpkg bundles])])
+
+AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"])
+
+
+
+
+# Enable the purify tool: --enable-purify, sets CC and LIBTOOL
+
+AC_ARG_ENABLE([purify],
+[AS_HELP_STRING([--enable-purify], [purify])])
+
+AC_MSG_CHECKING([for purify])
+
+AS_IF([test "x${enable_purify}" = "xyes"],
+[
+dnl if(purify -version) < /dev/null > /dev/null 2>&1; then
+  CC="purify --chain-length=20 -best-effort -windows=yes gcc -g"
+  LIBTOOL="${LIBTOOL} --tag=CC"
+  AC_MSG_RESULT([yes])
+dnl fi
+],
+[
+  AC_MSG_RESULT([no])
+])
+
+
+
+
+dnl Set extra needed compiler flags
+if test "x${CC}" = "xcc"; then
+  case "${host}" in
+    alpha*-dec-osf*) CFLAGS="${CFLAGS} -ieee";;
+  esac
+fi
+
+AM_CONDITIONAL([PURIFY], [test "x${enable_purify}" = "xyes"])
+
+
+
+
+dnl Test for cygwin to set AM_LDFLAGS in library & apps Makefile.ams
+dnl Replaces original version which used 'expr' and so wasn't entirely
+dnl portable.
+platform_cygwin="no"
+AC_MSG_CHECKING([for cygwin])
+case "${host}" in
+  *-*-mingw*|*-*-cygwin*)
+    platform_cygwin="yes"
+    ;;
+  *)
+    platform_cygwin="no"
+    ;;
+esac
+AC_MSG_RESULT([${platform_cygwin}])
+AM_CONDITIONAL([ISCYGWIN], [test "x${platform_cygwin}" = "xyes"])
+
+
+
+
+dnl Tests for AIX
+dnl If shared needs -Wl,-G in plplot,ajax,nucleus, -lX11 in plplot,
+dnl and -Wl,brtl -Wl,-bdynamic in emboss
+dnl We therefore need a static test as well
+needajax="no"
+
+AS_CASE([${host_os}],
+[aix*],
+[AM_CONDITIONAL([ISAIXIA64], [true])],
+[AM_CONDITIONAL([ISAIXIA64], [false])])
+
+AM_CONDITIONAL([ISSHARED], [test "x${enable_shared}" = "xyes"])
+
+AS_CASE([${host_os}],
+[aix*],
+[
+  AS_IF([test -d ajax/.libs],
+  [AS_ECHO(["AIX ajax/.libs exists"])], [mkdir ajax/.libs])
+
+  AS_CASE([${host_os}],
+  [aix5*], [needajax="no"],
+  [aix4.3.3*], [needajax="yes"],
+  [needajax="no"])
+])
+
+AM_CONDITIONAL([NEEDAJAX], [test "x${needajax}" = "xyes"])
+
+
+
+
+# HP-UX needs -lsec for shadow passwords
+
+AS_CASE([${host_os}],
+[hpux*],
+[AS_VAR_APPEND([LDFLAGS], [" -lsec"])])
+
+
+
+
+# GNU mcheck functions: --enable-mcheck, defines HAVE_MCHECK
+
+AC_ARG_ENABLE([mcheck],
+[AS_HELP_STRING([--enable-mcheck],
+[mcheck and mprobe memory allocation test])])
+
+AS_IF([test "x${enable_mcheck}" = "xyes"], [AC_CHECK_FUNCS([mcheck])])
+
+
+
+
+# Collect AJAX statistics: --enable-savestats, defines AJ_SAVESTATS
+
+AC_ARG_ENABLE([savestats],
+[AS_HELP_STRING([--enable-savestats],
+[save AJAX statistics and print with debug output])])
+
+AC_MSG_CHECKING([for savestats])
+
+AS_IF([test "x${enable_savestats}" = "xyes"],
+[
+  AC_DEFINE([AJ_SAVESTATS], [1],
+  [Define to 1 to collect AJAX library usage statistics.])
+  AC_MSG_RESULT([yes])
+],
+[
+  AC_MSG_RESULT([no])
+])
+
+
+
+
+AC_CONFIG_FILES([Makefile
+                 src/Makefile
+                 acd/Makefile
+                 doc/Makefile
+                 doc/html/Makefile
+                 doc/text/Makefile
+])
+
+AC_OUTPUT