diff GEMBASSY-1.0.3/acd/genret.acd @ 2:8947fca5f715 draft default tip

Uploaded
author ktnyt
date Fri, 26 Jun 2015 05:21:44 -0400
parents 84a17b3fad1f
children
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--- a/GEMBASSY-1.0.3/acd/genret.acd	Fri Jun 26 05:20:29 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,68 +0,0 @@
-application: genret [
-  documentation: "Retrieves various gene features from genome flatfile"
-  groups: "Edit, Data retrieval, Feature tables"
-  embassy: "gembassy"
-  relations: "EDAM_topic:0160 Sequence sites and features"
-  relations: "EDAM_topic:0091 Data handling"
-  relations: "EDAM_operation:2422 Data retrieval"
-]
-
-section: input [
-  information: "Input section"
-  type: "page"
-]
-
-  seqall: sequence [
-    parameter: "Y"
-    type: "nucleotide"
-    features: "Y"
-    relations: "EDAM_data:0849 Sequence record"
-  ]
-
-  string: gene [
-    parameter: "Y"
-    information: "List of gene name(s) to report"
-    knowntype: "sequence id list"
-    default: "*"
-  ]
-
-  string: access [
-    parameter: "Y"
-    information: "Name of gene feature to access"
-    knowntype: "feature key"
-    word: "Y"
-  ]
-
-endsection: input
-
-section: advanced [
-  information: "Advanced section"
-  type: "page"
-]
-
-  string: argument [
-    information: "Extra arguments to pass to method"
-    knowntype: "string"
-    default: ""
-  ]
-
-  boolean: accid [
-    information: "Include to use sequence accession ID as query"
-    default: "N"
-  ]
-
-endsection: advanced
-
-section: output [
-  information: "Output section"
-  type: "page"
-]
-
-  outfile: outfile [
-    parameter: "Y"
-    extension: "$(access).genret"
-    information: "Sequence output file"
-    knowntype: "sequence data"
-  ]
-
-endsection: output