Mercurial > repos > ktnyt > gembassy
diff GEMBASSY-1.0.3/acd/genret.acd @ 2:8947fca5f715 draft default tip
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author | ktnyt |
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date | Fri, 26 Jun 2015 05:21:44 -0400 |
parents | 84a17b3fad1f |
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--- a/GEMBASSY-1.0.3/acd/genret.acd Fri Jun 26 05:20:29 2015 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,68 +0,0 @@ -application: genret [ - documentation: "Retrieves various gene features from genome flatfile" - groups: "Edit, Data retrieval, Feature tables" - embassy: "gembassy" - relations: "EDAM_topic:0160 Sequence sites and features" - relations: "EDAM_topic:0091 Data handling" - relations: "EDAM_operation:2422 Data retrieval" -] - -section: input [ - information: "Input section" - type: "page" -] - - seqall: sequence [ - parameter: "Y" - type: "nucleotide" - features: "Y" - relations: "EDAM_data:0849 Sequence record" - ] - - string: gene [ - parameter: "Y" - information: "List of gene name(s) to report" - knowntype: "sequence id list" - default: "*" - ] - - string: access [ - parameter: "Y" - information: "Name of gene feature to access" - knowntype: "feature key" - word: "Y" - ] - -endsection: input - -section: advanced [ - information: "Advanced section" - type: "page" -] - - string: argument [ - information: "Extra arguments to pass to method" - knowntype: "string" - default: "" - ] - - boolean: accid [ - information: "Include to use sequence accession ID as query" - default: "N" - ] - -endsection: advanced - -section: output [ - information: "Output section" - type: "page" -] - - outfile: outfile [ - parameter: "Y" - extension: "$(access).genret" - information: "Sequence output file" - knowntype: "sequence data" - ] - -endsection: output