Mercurial > repos > ktnyt > gembassy
diff GEMBASSY-1.0.3/acd/gew.acd @ 2:8947fca5f715 draft default tip
Uploaded
author | ktnyt |
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date | Fri, 26 Jun 2015 05:21:44 -0400 |
parents | 84a17b3fad1f |
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--- a/GEMBASSY-1.0.3/acd/gew.acd Fri Jun 26 05:20:29 2015 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,58 +0,0 @@ -application: gew [ - documentation: "Calculates a measure of synonymous codon usage evenness (Ew)" - groups: "Nucleic:Codon Usage" - embassy: "gembassy" - relations: "EDAM_operation:0286 Codon usage analysis" - relations: "EDAM_topic:0107 Codon usage analysis" -] - -section: input [ - information: "Input section" - type: "page" -] - - seqall: sequence [ - parameter: "Y" - type: "nucleotide" - features: "Y" - relations: "EDAM_data:0849 Sequence record" - ] - -endsection: input - -section: advanced [ - information: "Advanced section" - type: "page" -] - - boolean: translate [ - information: "Include when translates using standard codon table" - default: "N" - ] - - string: delkey [ - information: "Regular expression to delete key (i.e. amino acids and nucleotides)" - knowntype: "regular expression" - default: "[^ACDEFGHIKLMNPQRSTVWYacgtU]" - ] - - boolean: accid [ - information: "Include to use sequence accession ID as query" - default: "N" - ] - -endsection: advanced - -section: output [ - information: "Output section" - type: "page" -] - - outfile: outfile [ - parameter: "Y" - information: "Codon usage output file" - knowntype: "codon usage" - relations: "EDAM_data:2865 Codon usage bias" - ] - -endsection: output