Mercurial > repos > ktnyt > gembassy
diff GEMBASSY-1.0.3/acd/gviewcds.acd @ 2:8947fca5f715 draft default tip
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author | ktnyt |
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date | Fri, 26 Jun 2015 05:21:44 -0400 |
parents | 84a17b3fad1f |
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--- a/GEMBASSY-1.0.3/acd/gviewcds.acd Fri Jun 26 05:20:29 2015 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,71 +0,0 @@ -application: gviewcds [ - documentation: "Displays a graph of nucleotide contents around start and stop codons" - groups: "Nucleic:Composition" - embassy: "gembassy" - relations: "EDAM_topic:0157 Sequence composition analysis" - relations: "EDAM_operation:0377 Sequence composition calculation - (nucleic acid)" -] - -section: input [ - information: "Input section" - type: "page" -] - - seqall: sequence [ - parameter: "Y" - type: "nucleotide" - features: "Y" - relations: "EDAM_data:0849 Sequence record" - ] - -endsection: input - -section: advanced [ - information: "Advanced section" - type: "page" -] - - integer: length [ - information: "Length in bases to show around start/stop codons" - default: "100" - ] - - integer: gap [ - information: "Gap shown in graph in between start/stop codon neighbors" - default: "3" - ] - - boolean: accid [ - information: "Include to use sequence accession ID as query" - default: "N" - ] - -endsection: advanced - -section: output [ - information: "Output section" - type: "page" -] - - toggle: plot [ - information: "Include to plot result" - default: "Y" - ] - - xygraph: graph [ - standard: "$(plot)" - gtitle: "gviewcds of $(sequence.name)" - multiple: "4" - ] - - outfile: outfile [ - standard: "@(!$(plot))" - nullok: "Y" - nulldefault: "$(plot)" - information: "Program compseq output file (optional)" - knowntype: "compseq output" - relations: "EDAM_data:3086 Nucleic acid sequence composition" - ] - -endsection: output