Mercurial > repos > ktnyt > gembassy
diff GEMBASSY-1.0.3/acd/gwvalue.acd @ 2:8947fca5f715 draft default tip
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author | ktnyt |
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date | Fri, 26 Jun 2015 05:21:44 -0400 |
parents | 84a17b3fad1f |
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--- a/GEMBASSY-1.0.3/acd/gwvalue.acd Fri Jun 26 05:20:29 2015 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,61 +0,0 @@ -application: gwvalue [ - documentation: "Calculates the 'relative adaptiveness of each codon' (W)" - groups: "Nucleic:Codon Usage" - embassy: "gembassy" - relations: "EDAM_operation:0286 Codon usage analysis" - relations: "EDAM_topic:0107 Codon usage analysis" -] - -section: input [ - information: "Input section" - type: "page" -] - - seqall: sequence [ - parameter: "Y" - type: "nucleotide" - features: "Y" - relations: "EDAM_data:0849 Sequence record" - ] - -endsection: input - -section: advanced [ - information: "Advanced section" - type: "page" -] - - string: include [ - information: "Regular expression to include genes in a reference set a - reference set in several studies are in-built 1: Nakamura - and Tabata, 2: Sharp and Li, 3: Sakai et al." - knowntype: "regular expression" - default: "ribosomal.*protein" - ] - - string: exclude [ - information: "Regular expression to exclude genes from a reference set" - knowntype: "regular expression" - default: "[Mm]itochondrial" - ] - - boolean: accid [ - information: "Include to use sequence accession ID as query" - default: "N" - ] - -endsection: advanced - -section: output [ - information: "Output section" - type: "page" -] - - outfile: outfile [ - parameter: "Y" - information: "Codon usage output file" - knowntype: "codon usage" - relations: "EDAM_data:2865 Codon usage bias" - ] - -endsection: output