Mercurial > repos > ktnyt > gembassy
diff glang-galaxy-conf/kbws/kcentroidfold.xml @ 2:8947fca5f715 draft default tip
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author | ktnyt |
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date | Fri, 26 Jun 2015 05:21:44 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/glang-galaxy-conf/kbws/kcentroidfold.xml Fri Jun 26 05:21:44 2015 -0400 @@ -0,0 +1,19 @@ +<tool id="EMBOSS: kcentroidfold" name="kcentroidfold" version="1.0.2"> + <description>Predicts RNA 2D structure using CentroidFold</description> + <command>kcentroidfold -seqall $input1 -engine $engine -gamma $gamma -auto -outfile $out_file1</command> + <inputs> + <param format="data" name="input1" type="data"> + <label>Sequence</label> + </param> + <param name="engine" size="4" type="text" value="CONTRAfold"> + <label>specify the inference engine. 'CONTRAfold', 'McCaskill', 'pfold' or 'AUX'</label> + </param> + <param name="gamma" size="4" type="integer" value="4"> + <label>weight of base pairs (2^-5 ~ 2^10)</label> + </param> + + </inputs> + <outputs> + <data format="txt" name="out_file1" label="${tool.name} for ${input1.name}" /> + </outputs> +</tool>