view GEMBASSY-1.0.3/acd/gcircularmap.acd @ 0:8300eb051bea draft

Initial upload
author ktnyt
date Fri, 26 Jun 2015 05:19:29 -0400
parents
children
line wrap: on
line source

application: gcircularmap [
  documentation: "Draws circular map of the genome"
  groups: "Display"
  embassy: "gembassy"
  relations: "EDAM_topic:0092 Data visualisation"
  relations: "EDAM_topic:0621 Genome, proteome and model organisms"
  relations: "EDAM_operation:0578 Circular map rendering"
]

section: input [
  information: "Input section"
  type: "page"
]

  seqall: sequence [
    parameter: "Y"
    type: "nucleotide"
    features: "Y"
    relations: "EDAM_data:0849 Sequence record"
  ]

  string: format [
    information: "Output file format. Dependent on 'convert' command"
    knowntype: "output format"
    default: "svg"
  ]

endsection: input

section: advanced [
  information: "Advanced section"
  type: "page"
]

  boolean: accid [
    information: "Include to use sequence accession ID as query"
    default: "N"
  ]

endsection: advanced

section: output 
[
  information: "Output section"
  type: "page"
]

  string: goutfile [
    information: "Output file for non interactive displays"
    relations: "EDAM_data:1274 DNA map"
    default: "gcircularmap"
  ]

endsection: output