Mercurial > repos > ktnyt > gembassy
view GEMBASSY-1.0.3/acd/ggcsi.acd @ 0:8300eb051bea draft
Initial upload
author | ktnyt |
---|---|
date | Fri, 26 Jun 2015 05:19:29 -0400 |
parents | |
children |
line wrap: on
line source
application: ggcsi [ documentation: "GC Skew Index: an index for strand-specific mutational bias" groups: "Nucleic:Composition" embassy: "gembassy" relations: "EDAM_topic:0157 Sequence composition analysis" relations: "EDAM_operation:0377 Sequence composition calculation (nucleic acid)" ] section: input [ information: "Input section" type: "page" ] seqall: sequence [ parameter: "Y" type: "nucleotide" features: "Y" relations: "EDAM_data:0849 Sequence record" ] endsection: input section: advanced [ information: "Advanced section" type: "page" ] selection: gcsi [ information: "GCSI version to use" values: "1;2" default: "2" ] integer: window [ information: "Number of windows. Must be a power of 2" default: "4096" ] boolean: purine [ information: "Use purine skew for calculation" default: "N" ] boolean: keto [ information: "Use keto skew for calculation" default: "N" ] boolean: at [ information: "Use AT skew for calculation" default: "N" ] boolean: pval [ information: "Calculate p-value when GCSI version 2 is selected" default: "N" ] endsection: advanced section: output [ information: "Output section" type: "page" ] outfile: outfile [ parameter: "Y" information: "Program compseq output file" knowntype: "compseq output" relations: "EDAM_data:3086 Nucleic acid sequence composition" ] endsection: output