Mercurial > repos > ktnyt > gembassy
view GEMBASSY-1.0.3/acd/ggcskew.acd @ 1:84a17b3fad1f draft
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author | ktnyt |
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date | Fri, 26 Jun 2015 05:20:29 -0400 |
parents | 8300eb051bea |
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application: ggcskew [ documentation: "Calculates and plots the GC skew of the input sequence" groups: "Nucleic:Composition" embassy: "gembassy" relations: "EDAM_topic:0157 Sequence composition analysis" relations: "EDAM_operation:0377 Sequence composition calculation (nucleic acid)" ] section: input [ information: "Input section" type: "page" ] seqall: sequence [ parameter: "Y" type: "nucleotide" features: "Y" relations: "EDAM_data:0849 Sequence record" ] endsection: input section: advanced [ information: "Advanced section" type: "page" ] integer: window [ information: "Window size to observe" default: "10000" ] integer: slide [ information: "Window slide size" default: "10000" ] boolean: cumulative [ information: "Include to calculate cumulative skew" default: "N" ] boolean: at [ information: "Include for observing AT skew instead of GC skew" default: "N" ] boolean: purine [ information: "Include for observing purine (AG/TC) skew" default: "N" ] boolean: keto [ information: "Include for observing keto (TG/AC) skew" default: "N" ] endsection: advanced section: output [ information: "Output section" type: "page" ] toggle: plot [ information: "Include to plot result" default: "Y" ] xygraph: graph [ standard: "$(plot)" gtitle: "ggcskew of $(sequence.name)" ] outfile: outfile [ standard: "@(!$(plot))" nullok: "Y" nulldefault: "$(plot)" information: "Program compseq output file (optional)" knowntype: "compseq output" relations: "EDAM_data:3086 Nucleic acid sequence composition" ] endsection: output