Mercurial > repos > kyost > atac_primer_tool
diff filter_bam.bash @ 5:3cd53127a838 draft default tip
planemo upload commit 103cb51ec368438642504c3f98b76c363db478bb
author | kyost |
---|---|
date | Fri, 04 May 2018 02:24:47 -0400 |
parents | fd3ea97a96bc |
children |
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--- a/filter_bam.bash Wed May 02 13:20:21 2018 -0400 +++ b/filter_bam.bash Fri May 04 02:24:47 2018 -0400 @@ -29,7 +29,7 @@ #create bed file of fragments for each bam file -samtools view -b -L $ext_peak_file $bam_file > $filtered_bam_file +samtools view -b -F 4 -L $ext_peak_file $bam_file > $filtered_bam_file rm name rm count