# MS to Peakforest


Metadata
--------

 * **@name**: MS2PF
 * **@version**: 1.2.1
 * **@authors**: Lain Pavot (PFEM - INRAE - MetaboHUB)
 * **@maintainers**: Lain Pavot (PFEM - INRAE - MetaboHUB)
 * **@init date**: 2022, November
 * **@main usage**:
Generates peakforest forms, auto-filled with data and metadata provided
with files or parametres.
Lets you check data and metadata, correct, and send them to the peakforest
instance of you choice.

test
----

Test with FragNot data
```sh
input='Galaxy10-[Cmpd1-1__INCHIKEY___GIAZPLMMQOERPN-UHFFFAOYSA-N__RT___0..ABINITIOFRAGNOT_PForest.tabular].tabular'
input="test-data/${input}"
./server.py \
  --input ''${input}'',''${input}'',''${input}'' \
  --raw-metadata \'${input},${input},${input}\' \
  --method cf_pfem_urine_qtof \
  --peakforest-url https://metabohub.peakforest.org \
  --scan-type ms \
  --polarity positive \
  --name 'test1,test2,test3'
```

Test with MS2Snoop data
```sh
input='out-smol-base.tsv'
input="test-data/${input}"
./server.py \
  --input ''${input}'' \
  --method cf_pfem_urine_qtof \
  --pf_url https://nightly.peakforest.org \
  --scan_type ms \
  --polarity positive
```

Services provided
-----------------

 * Help and support: support@workflow4metabolomics.org


License
-------

 * Cea Cnrs Inria Logiciel Libre License, version 2.1 (CECILL-2.1)