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| author | lain |
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| date | Wed, 30 Aug 2023 14:21:18 +0000 |
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<!doctype HTML> <html lang="en"> <head> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="author" content="MetaboHUB"> <link rel="icon" type="image/ico" href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/ico/favicon.ico"> <title>PeakForest MetaboHub</title> <meta name="keywords" content="spectral database, mass spectrometry, nmr, lc-ms, gc-ms, chemical, metabolomic, compound, library"> <meta name="description" content="PeakForest is a spectral data portal for Metabolomics community. It provides storage and annotation services for metabolic profils of biological matrix. It relies on the wide range of complementary methods using UPLC-(API)HRMS, GC-QToF, and NMR."> <style>.file-input-wrapper { overflow: hidden; position: relative; cursor: pointer; z-index: 1; }.file-input-wrapper input[type=file], .file-input-wrapper input[type=file]:focus, .file-input-wrapper input[type=file]:hover { position: absolute; top: 0; left: 0; cursor: pointer; opacity: 0; filter: alpha(opacity=0); z-index: 99; outline: 0; }.file-input-name { margin-left: 8px; }</style> <link href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/css/bootstrap.min.css" rel="stylesheet"> <link href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/css/sb-admin.min.css" rel="stylesheet"> <link rel="stylesheet" href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/font-awesome/css/font-awesome.min.css"> <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/jquery.min.js"></script> <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/bootstrap.min.js"></script> <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/bootstrap-typeahead.min.js"></script> <link href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/css/bootstrap-select.min.css" media="screen" rel="stylesheet" type="text/css"> <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/bootstrap-select.min.js" type="text/javascript"></script> <link href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/css/bootstrap-datepicker.min.css" media="screen" rel="stylesheet" type="text/css"> <script type="text/javascript" src="/common.js"></script> <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/bootstrap-datepicker.min.js" type="text/javascript"></script> <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/jquery.tmpl.min.js" type="text/javascript"></script> <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/highcharts/js/highcharts.min.js"></script> <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/highcharts/js/modules/exporting.min.js"></script> <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/highcharts/js/themes/grid.min.js"></script> <link href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/css/bootstrap.overwrite.min.css" rel="stylesheet" media="screen"> <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/peakforest.min.js"></script> <script type="text/javascript" src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/tablesorter/jquery.tablesorter.min.js"></script> <script type="text/javascript" src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/tablesorter/tables.min.js"></script> <link rel="stylesheet" href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/nmrpro/specdraw.min.css" type="text/css"> <meta name="viewport" content="width=device-width, initial-scale=1"> </head> <body> <div id="page-wrapper" class="peakforest-main-wrapper"> <div> <button class="btn btn-validate" onclick="ctx().exit()">Close MS2PF</button> </div> <div class="row" style="margin-bottom: 50px;"> <div id="add-spectrum"> <div class="panel-group" id="accordion-{{ TAB_INDEX_PLACEHOLDER }}"> <div class="panel panel-default"> <div class="panel-heading panel-success"> <h4 class="panel-title"> <a data-toggle="collapse" data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}" href="#step0-{{ TAB_INDEX_PLACEHOLDER }}" > Spectrum Type <i id="step0sign-{{ TAB_INDEX_PLACEHOLDER }}" class="fa fa-question-circle" ></i> </a> </h4> </div> <div id="step0-{{ TAB_INDEX_PLACEHOLDER }}" class="panel-collapse collapse in" > <div class="panel-bodỵ"> <button class="btn btn-disabled" disabled="disabled"><i class="fa fa-plus-circle" ></i> GC-MS spectrum</button> <button id="set_LC_MS_spectrum_button" class="btn btn-primary" onclick="ctx().addOneSpectrum(2);"><i class="fa fa-plus-circle" ></i> LC-MS spectrum</button> <button id="set_LC_MSMS_spectrum_button" class="btn btn-primary" onclick="ctx().addOneSpectrum(5);"><i class="fa fa-plus-circle" ></i> LC-MSMS spectrum</button> </div> </div> </div> <div id="add1spectrum-sampleData-{{ TAB_INDEX_PLACEHOLDER }}" class="panel panel-default" style="display: none;"> <div class="panel-heading panel-success"> <h4 class="panel-title"> <a id="linkActivateStep1-{{ TAB_INDEX_PLACEHOLDER }}" data-toggle="collapse" data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}" href="#step1-{{ TAB_INDEX_PLACEHOLDER }}" > Sample Type <i id="step1sign-{{ TAB_INDEX_PLACEHOLDER }}" class="fa fa-question-circle" ></i> </a> </h4> </div> <div id="step1-{{ TAB_INDEX_PLACEHOLDER }}" class="panel-collapse collapse" > <div class="panel-bodỵ"> <div class="col-lg-12"> <div class="col-lg-8"> <div class="panel panel-default"> <div class="panel-heading"> <div class="form-group input-group has-error"> <span class="input-group-addon"> Sample Type </span> <select id="add1spectrum-sample-type-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-sampleForm is-mandatory"> <option value="" selected="selected" disabled="disabled">choose in list…</option> <option value="compound-mix"> Mix of Ref. Chemical Compound </option> </select> </div> </div> <div class="panel-bodỵ"> <div id="add1spectrum-sample-type-compound-mix-{{ TAB_INDEX_PLACEHOLDER }}" class="add1spectrum-sample-type-panel" style="display:none;"> <div class="form-group input-group has-warning"> <span class="input-group-addon">solvent</span> <select id="add1spectrum-sample-mixSolvent-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-sampleForm is-optional" > <option value="" selected="selected" disabled="disabled">choose in list…</option> <option value="H2O/ethanol (75/25)">H2O/ethanol (75/25)</option> </select> </div> </div> <div id="add1spectrum-sample-type-rcc-added-{{ TAB_INDEX_PLACEHOLDER }}" class="panel panel-default add1spectrum-sample-type-panel" style="display:none" > <div class="panel-heading"> <h3 class="panel-title">Reference compound added</h3> </div> <div class="panel-bodỵ" style="padding: 0px;"> <div id="container_RCC_ADDED-{{ TAB_INDEX_PLACEHOLDER }}" class="handsontable" ></div> </div> </div> </div> </div> </div> <div class="col-lg-4"> <div id="sample-bonus-display-{{ TAB_INDEX_PLACEHOLDER }}"></div> </div> </div> <div class="col-lg-12"> <div class="col-lg-8"> <br> <button id="btnSwitch-gotoStep2-{{ TAB_INDEX_PLACEHOLDER }}" onclick="ctx().switchToStep(2)" class="btn btn-disabled switchStep" disabled="" > <i class="fa fa-arrow-circle-down"></i> Next! </button> </div> <div class="col-lg-4"> </div> </div> </div> </div> </div> <div id="add1spectrum-chromatographyData-LC-{{ TAB_INDEX_PLACEHOLDER }}" class="panel panel-default" style="display: none;" > <div class="panel-heading panel-success"> <h4 class="panel-title"> <a id="linkActivateStep2-lc-{{ TAB_INDEX_PLACEHOLDER }}" data-toggle="collapse" data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}" href="#step2-lc-{{ TAB_INDEX_PLACEHOLDER }}" > Liquid Chromatography <i id="step2-lc-sign-{{ TAB_INDEX_PLACEHOLDER }}" class="fa fa-question-circle" ></i> </a> </h4> </div> <div id="step2-lc-{{ TAB_INDEX_PLACEHOLDER }}" class="panel-collapse collapse" > <div class="panel-bodỵ"> <div class="col-lg-12"> <div class="col-lg-6"> <div class="panel panel-default"> <div class="panel-heading"> <h3 class="panel-title">Chromatography Param.</h3> </div> <div class="panel-bodỵ"> <div class="form-group input-group has-error"> <span class="input-group-addon">Method</span> <select id="add1spectrum-chromatoLC-method-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory" ></select> </div> <div id="alertBoxSelectTemplate-{{ TAB_INDEX_PLACEHOLDER }}"></div> <div class="form-group input-group has-error"> <span class="input-group-addon">Column constructor</span> <select id="add1spectrum-chromatoLC-colConstructor-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory" > <option value="" selected="selected" disabled="disabled">choose in list…</option> </select> </div> <div class="form-group input-group "> <span class="input-group-addon">Column constructor (other)</span> <input id="add1spectrum-chromatoLC-colConstructorOther-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm" disabled="disabled" placeholder="e.g. HAL 9000"> </div> <div class="form-group input-group has-warning"> <span class="input-group-addon">Column name</span> <input id="add1spectrum-chromatoLC-colName-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-optional" placeholder="e.g. UPLC HSS T3"> </div> <div class="form-group input-group has-error"> <span class="input-group-addon">Column length (mm)</span> <input id="add1spectrum-chromatoLC-colLength-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory" placeholder="e.g. 150"> </div> <div class="form-group input-group has-error"> <span class="input-group-addon">Column diameter (mm)</span> <input id="add1spectrum-chromatoLC-colDiameter-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory" placeholder="e.g. 2.1"> </div> <div class="form-group input-group has-error"> <span class="input-group-addon">Particule size (µm)</span> <input id="add1spectrum-chromatoLC-colParticuleSize-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory" placeholder="e.g. 1.8"> </div> <div class="form-group input-group has-warning"> <span class="input-group-addon">Column temperature (°C)</span> <input id="add1spectrum-chromatoLC-colTemperature-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-optional" placeholder="e.g. 30"> </div> <div class="form-group input-group has-error"> <span class="input-group-addon">LC mode</span> <select id="add1spectrum-chromatoLC-LCMode-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory"> <option value="" selected="selected" disabled="disabled">choose in list…</option> <option value="Gradient">Gradient</option> <option value="Isocratic">Isocratic</option> </select> </div> <div class="form-group input-group has-warning"> <span class="input-group-addon">Separation flow rate (µL/min)</span> <input id="add1spectrum-chromatoLC-separationFlowRate-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-optional" placeholder="e.g. 400"> </div> <div class="form-group input-group has-error"> <span class="input-group-addon">Separation solvent A</span> <select id="add1spectrum-chromatoLC-separationSolvA-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory" > <option value="" selected="selected" disabled="disabled">choose in list…</option> </select> </div> <div class="form-group input-group has-warning"> <span class="input-group-addon">pH solvent A (if acqueous solvant)</span> <input id="add1spectrum-chromatoLC-separationSolvApH-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-optional" placeholder="e.g. 7.0"> </div> <div class="form-group input-group has-error"> <span class="input-group-addon">Separation solvent B</span> <select id="add1spectrum-chromatoLC-separationSolvB-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory" > </select> </div> <div class="form-group input-group has-warning"> <span class="input-group-addon">pH solvent B (if acqueous solvant)</span> <input id="add1spectrum-chromatoLC-separationSolvBApH-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-optional" placeholder="e.g. 7.0"> </div> </div> </div> </div> <div class="col-lg-6"> <div class="panel panel-default"> <div class="panel-heading"> <h3 class="panel-title">Separation flow gradient</h3> </div> <div class="panel-bodỵ" style="padding: 0px;"> <div id="container_LC_SFG-{{ TAB_INDEX_PLACEHOLDER }}" class="handsontable"></div> </div> </div> </div> </div> <div class="col-lg-12"> <div class="col-lg-8"> <br> <button id="btnSwitch-gotoStep3-lc-{{ TAB_INDEX_PLACEHOLDER }}" onclick="ctx().switchToStep(3);" class="btn btn-disabled switchStep" disabled=""><i class="fa fa-arrow-circle-down"></i> Next!</button> </div> <div class="col-lg-4"> </div> </div> </div> </div> </div> <div id="add1spectrum-chromatographyData-GC-{{ TAB_INDEX_PLACEHOLDER }}" class="panel panel-default" style="display: none;"> <div class="panel-heading panel-success"> <h4 class="panel-title"> <a id="linkActivateStep2-gc-{{ TAB_INDEX_PLACEHOLDER }}" data-toggle="collapse" data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}" href="#step2-gc-{{ TAB_INDEX_PLACEHOLDER }}"> Gaz Chromatography <i id="step2-gc-sign-{{ TAB_INDEX_PLACEHOLDER }}" class="fa fa-question-circle"></i> </a> </h4> </div> <div id="step2-gc-{{ TAB_INDEX_PLACEHOLDER }}" class="panel-collapse collapse"> <div class="panel-bodỵ"> <div class="col-lg-12"> <div class="col-lg-6"> i <3 GC </div> <div class="col-lg-6"> </div> </div> <div class="col-lg-12"> <div class="col-lg-8"> <br> <button id="btnSwitch-gotoStep3-gc-{{ TAB_INDEX_PLACEHOLDER }}" onclick="ctx().switchToStep(3);" class="btn btn-disabled switchStep" disabled=""><i class="fa fa-arrow-circle-down"></i> Next!</button> </div> <div class="col-lg-4"> </div> </div> </div> </div> </div> <div id="add1spectrum-analyserData-MS-{{ TAB_INDEX_PLACEHOLDER }}" class="panel panel-default" style="display: none;"> <div class="panel-heading panel-success"> <h4 class="panel-title"> <a id="linkActivateStep3-ms-{{ TAB_INDEX_PLACEHOLDER }}" data-toggle="collapse" data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}" href="#step3-ms-{{ TAB_INDEX_PLACEHOLDER }}"> MS Analyzer <i id="step3-ms-sign-{{ TAB_INDEX_PLACEHOLDER }}" class="fa fa-question-circle"></i> </a> </h4> </div> <div id="step3-ms-{{ TAB_INDEX_PLACEHOLDER }}" class="panel-collapse collapse"> <div class="panel-bodỵ"> <div class="col-lg-12"> <div class="col-lg-6"> <br> <div class="panel panel-default"> <div class="panel-heading"> <h3 class="panel-title">Analyzer</h3> </div> <div class="panel-bodỵ"> <div class="form-group input-group has-error"> <span class="input-group-addon">Instrument</span> <input id="add1spectrum-analyzer-ms-instrument-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-mandatory" placeholder="e.g. Q-TOF; LTQ - Orbitrap"> </div> <div class="form-group input-group has-warning"> <span class="input-group-addon">Model</span> <input id="add1spectrum-analyzer-ms-model-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" placeholder="e.g. QToF micro (Micromass Waters); XL; Impact II; ..."> </div> <div class="form-group"> <div class="form-group input-group has-error"> <span class="input-group-addon">Ion analyzer Type</span> <input id="add1spectrum-analyzer-ms-ionAnalyzerType-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-mandatory" placeholder="e.g. QTOF; QQQ; ..."> </div> <p class="help-block"> <small> Ion analyzer types are "B", "E", "FT" (include other types using FT like FTICR or Orbitrap), "IT", "Q", "TOF" (e.g.: "QTOF", "QQQ", "EB", "ITFT"); for further informations please refer to <a target="_BLANK" href="https://github.com/MassBank/MassBank-web/blob/main/Documentation/MassBankRecordFormat.md#212-record_title">MassBank Record documentation</a>. </small> </p> </div> </div> </div> </div> <div class="col-lg-6"> <br> <div class="panel panel-default"> <div class="panel-heading"> <h3 class="panel-title">Molecule Ionization</h3> </div> <div class="panel-bodỵ"> <div class="form-group input-group has-error"> <span class="input-group-addon">Ionization method <small>(POS/NEG)</small></span> <select id="add1spectrum-analyzserMS-ionizationMethod-pos-{{ TAB_INDEX_PLACEHOLDER }}" style="max-width: 50%;" class="form-control add1spectrum add1spectrum-analyzerMSForm is-mandatory one-or-more" > </select> <select id="add1spectrum-analyzserMS-ionizationMethod-neg-{{ TAB_INDEX_PLACEHOLDER }}" style="max-width: 50%;" class="form-control add1spectrum add1spectrum-analyzerMSForm is-mandatory one-or-more" > </select> </div> <div class="form-group input-group has-warning"> <span class="input-group-addon"> Spray (needle) gaz flow <br><small>(arbitrary in Xcalibur, POS/NEG)</small> </span> <input id="add1spectrum-analyzserMS-sprayGazFlow-pos-{{ TAB_INDEX_PLACEHOLDER }}" style="max-width: 50%;" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" placeholder="e.g. 40 (POS)" > <input id="add1spectrum-analyzserMS-sprayGazFlow-neg-{{ TAB_INDEX_PLACEHOLDER }}" style="max-width: 50%;" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" placeholder="e.g. 20 (NEG)" > </div> <div class="form-group input-group has-warning"> <span class="input-group-addon"> Vaporizer gaz flow <br><small>(arbitrary in Xcalibur, POS/NEG)</small> </span> <input id="add1spectrum-analyzserMS-vaporizerGazFlow-pos-{{ TAB_INDEX_PLACEHOLDER }}" style="max-width: 50%;" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" placeholder="e.g. 10 (POS)" /> <input id="add1spectrum-analyzserMS-vaporizerGazFlow-neg-{{ TAB_INDEX_PLACEHOLDER }}" style="max-width: 50%;" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" placeholder="e.g. 5 (NEG)" /> </div> <div class="form-group input-group has-warning"> <span class="input-group-addon"> Vaporizer temperature <br><small>(°C, POS/NEG)</small> </span> <input id="add1spectrum-analyzserMS-vaporizerTemperature-pos-{{ TAB_INDEX_PLACEHOLDER }}" style="max-width: 50%;" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" placeholder="e.g. 330 (POS)" /> <input id="add1spectrum-analyzserMS-vaporizerTemperature-neg-{{ TAB_INDEX_PLACEHOLDER }}" style="max-width: 50%;" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" placeholder="e.g. 330 (NEG)" /> </div> <div class="form-group input-group has-warning"> <span class="input-group-addon"> Source gaz flow <br><small>(arbitrary in Xcalibur, POS/NEG)</small> </span> <input id="add1spectrum-analyzserMS-sourceGazFlow-pos-{{ TAB_INDEX_PLACEHOLDER }}" style="max-width: 50%;" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" placeholder="e.g. 40 (POS)" /> <input id="add1spectrum-analyzserMS-sourceGazFlow-neg-{{ TAB_INDEX_PLACEHOLDER }}" style="max-width: 50%;" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" placeholder="e.g. 40 (NEG)" /> </div> <div class="form-group input-group has-warning"> <span class="input-group-addon"> Ion transfer tube temperature <br> Transfer capillary temperature <small>(°C, POS/NEG)</small> </span> <input id="add1spectrum-analyzserMS-ionTransferTubeTemperatureOrTransferCapillaryTemperature-pos-{{ TAB_INDEX_PLACEHOLDER }}" style="max-width: 50%;" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" placeholder="e.g. 350 (POS)" /> <input id="add1spectrum-analyzserMS-ionTransferTubeTemperatureOrTransferCapillaryTemperature-neg-{{ TAB_INDEX_PLACEHOLDER }}" style="max-width: 50%;" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" placeholder="e.g. 350 (NEG)" /> </div> <div class="form-group input-group has-warning"> <span class="input-group-addon"> High voltage (ESI) <br> Corona voltage (APCI) <small>(in kV, POS/NEG)</small> </span> <input id="add1spectrum-analyzserMS-highVoltageOrCoronaVoltage-pos-{{ TAB_INDEX_PLACEHOLDER }}" style="max-width: 50%;" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" placeholder="e.g. 3.5 (POS)" /> <input id="add1spectrum-analyzserMS-highVoltageOrCoronaVoltage-neg-{{ TAB_INDEX_PLACEHOLDER }}" style="max-width: 50%;" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" placeholder="e.g. 2.8 (NEG)" /> </div> </div> </div> </div> <div class="col-lg-6 opt-msms"> <br> <div class="panel panel-default"> <div class="panel-heading"> <h3 class="panel-title">Ion Storage / Ion Beam</h3> </div> <div class="panel-bodỵ"> <div class="form-group input-group has-warning"> <span class="input-group-addon">Type <small>(storage / beam)</small></span> <select id="add1spectrum-ionTrapBeam-type-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional one-or-more"> <option value="" selected="selected" disabled="disabled">choose in list…</option> <option value="trap">Ion Trap</option> <option value="beam">Ion Beam</option> </select> </div> <p class="help-block"> <small> Ion storage: Ion Trap (IT) and ICR. <br>Ion beam: Q or H collision Cell (QQQ, QQIT, QQ/TOF, Fusion). </small> </p> <div class="form-group input-group has-success"> <span class="input-group-addon">Gas </span> <select id="add1spectrum-ionTrapBeam-ionGas-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional "> <option value="He">He</option> <option value="N2">N2</option> <option value="Ar">Ar</option> </select> </div> <div class="form-group input-group has-warning"> <span class="input-group-addon">Gas pressure</span> <input id="add1spectrum-ionTrapBeam-ionGasPressureValue-{{ TAB_INDEX_PLACEHOLDER }}" type="text" style="max-width: 50%;" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" /> <select id="add1spectrum-ionTrapBeam-ionGasPressureUnit-{{ TAB_INDEX_PLACEHOLDER }}" style="max-width: 50%;" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" > <option value="" selected="selected" disabled="disabled">choose in list…</option> <option value="mbar">mbar</option> <option value="au">a.u.</option> </select> </div> <div class="form-group input-group add1spectrum-ionTrap has-warning"> <span class="input-group-addon">Frequency Shift <small>(KHz)</small></span> <input id="add1spectrum-ionTrapBeam-ionFrequencyShift-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" placeholder="e.g.: ..." /> </div> <div class="form-group input-group add1spectrum-ionTrap has-warning"> <span class="input-group-addon">Ion Number <small>(AGC or ICC)</small></span> <input id="add1spectrum-ionTrapBeam-ionNumber-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" placeholder="e.g.: ..." /> </div> </div> </div> </div> </div> <div class="col-lg-12"> <div class="col-lg-8"> <br> <button id="btnSwitch-gotoStep4-ms-{{ TAB_INDEX_PLACEHOLDER }}" onclick="ctx().switchToStep(4);" class="btn btn-disabled switchStep" disabled="" > <i class="fa fa-arrow-circle-down"></i> Next! </button> </div> <div class="col-lg-4"> </div> </div> </div> </div> </div> <div id="add1spectrum-peaksData-MS-{{ TAB_INDEX_PLACEHOLDER }}" class="panel panel-default" style="display: none;" > <div class="panel-heading panel-success"> <h4 class="panel-title"> <a id="linkActivateStep4-ms-{{ TAB_INDEX_PLACEHOLDER }}" data-toggle="collapse" data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}" href="#step4-ms-{{ TAB_INDEX_PLACEHOLDER }}" > MS Peaks <i id="step4-ms-sign-{{ TAB_INDEX_PLACEHOLDER }}" class="fa fa-question-circle" ></i> </a> </h4> </div> <div id="step4-ms-{{ TAB_INDEX_PLACEHOLDER }}" class="panel-collapse collapse"> <div class="panel-bodỵ"> <div class="col-lg-12"> <!-- <div class="form-group input-group col-lg-3 has-success"> <span class="input-group-addon">scan type</span> <select style="width: 150px;" id="add1spectrum-peaksMS-msLevel-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-peaksMSForm-peaklist add1spectrum-peaksMSForm-peaklist-reset add1spectrum-peaksMSForm is-mandatory" > <option value="" disabled="disabled">choose in list…</option> <option class="enable-if-ms" value="ms" disabled="disabled" selected="selected">ms</option> <option class="enable-if-msms" value="ms2" disabled="disabled">ms2</option> </select> </div> --> <div class="form-group input-group col-lg-3 has-error"> <span class="input-group-addon">polarity</span> <select style="width: 150px;" id="add1spectrum-peaksMS-polarity-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-peaksMSForm-peaklist add1spectrum-peaksMSForm-peaklist-reset add1spectrum-peaksMSForm is-mandatory" > <option value="" selected="selected" disabled="disabled">choose in list…</option> <option value="positive" disabled="disabled">positive</option> <option value="negative" disabled="disabled">negative</option> </select> </div> <div class="form-group input-group col-lg-3 has-error"> <span class="input-group-addon">resolution</span> <select style="width: 150px;" id="add1spectrum-peaksMS-resolution-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-peaksMSForm-peaklist add1spectrum-peaksMSForm-peaklist-reset add1spectrum-peaksMSForm is-mandatory" > <option value="" disabled="disabled">choose in list…</option> <option value="low">low</option> <option selected="selected" value="high">high</option> </select> </div> <div class="form-group input-group col-lg-3 has-success"> <span class="input-group-addon">curation</span> <select style="width: 150px;" id="add1spectrum-peaksMS-curation-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-peaksMSForm-peaklist add1spectrum-peaksMSForm-peaklist-reset add1spectrum-peaksMSForm is-optional" > <option value="no_curation" selected="selected">no curation</option> <option value="peaks_RI_sup_1percent">Peaks RI > 1%</option> <option value="top_50_peaks">Top 50 peaks</option> <option value="top_20_peaks">Top 20 peaks</option> <option value="top_10_peaks">Top 10 peaks</option> <option value="similar_chromatographic_profile">Similar chromatographic profile</option> </select> </div> </div> <br> <div class="col-lg-12 opt-msms"> <hr> <div class="form-group input-group col-lg-4 has-success"> <span class="input-group-addon"> Isolation mode <i class="fa fa-question-circle" title="IT / Q / TOF / ICR"></i> </span> <select id="add1spectrum-peaksMS-isolationMode-{{ TAB_INDEX_PLACEHOLDER }}" class="disabled-if-ms form-control add1spectrum add1spectrum-peaksMSForm-peaklist add1spectrum-peaksMSForm is-optional add1spectrum-peaksMSForm-peaklist-reset" > <option value="" disabled="disabled">choose in list…</option> <option value="IT">IT</option> <option value="Q">Q</option> <option value="TOF">TOF</option> <option value="ICR">ICR</option> </select> </div> <div class="form-group input-group col-lg-4 has-warning"> <span class="input-group-addon"> Isolation window <i class="fa fa-question-circle" title="(+ / - value)"></i> </span> <input id="add1spectrum-peaksMS-isolationWindow-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="disabled-if-ms form-control add1spectrum add1spectrum-peaksMSForm-peaklist is-optional add1spectrum-peaksMSForm-peaklist-reset" placeholder="e.g. ..." /> </div> <div class="form-group input-group col-lg-4 has-warning"> <span class="input-group-addon">qz isolation / activation <i class="fa fa-question-circle" title="if IT"></i> <small>(no unit)</small></span> <input id="add1spectrum-peaksMS-qzIsolation-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="disabled-if-ms form-control add1spectrum add1spectrum-peaksMSForm-peaklist is-optional add1spectrum-peaksMSForm-peaklist-reset" placeholder="e.g. ..." /> </div> <div class="form-group input-group col-lg-4 has-warning"> <span class="input-group-addon">Activation time <i class="fa fa-question-circle" title="if FT-ICR (SORI-CID) or IT"></i> <small>(ms)</small></span> <input id="add1spectrum-peaksMS-activationTime-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="disabled-if-ms form-control add1spectrum add1spectrum-peaksMSForm-peaklist is-optional add1spectrum-peaksMSForm-peaklist-reset" placeholder="e.g. ..." /> </div> <div class="form-group input-group col-lg-4 has-success"> <span class="input-group-addon"> Mode <i class="fa fa-question-circle" title="HCD / CID / ECD /ETD"></i> </span> <select id="add1spectrum-peaksMS-mode-{{ TAB_INDEX_PLACEHOLDER }}" class="disabled-if-ms form-control add1spectrum add1spectrum-peaksMSForm-peaklist add1spectrum-peaksMSForm is-optional" > <option value="" disabled="disabled">choose in list…</option> <option value="HCD">HCD</option> <option value="CID">CID</option> <option value="ECD">ECD</option> <option value="ETD">ETD</option> </select> </div> <div class="form-group input-group col-lg-4 has-warning"> <span class="input-group-addon"> Frag. energy <i class="fa fa-question-circle" title="without unit"></i> </span> <input id="add1spectrum-peaksMS-frag-nrj-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="disabled-if-ms form-control add1spectrum add1spectrum-peaksMSForm-peaklist is-optional" placeholder="e.g. ..." > </div> </div> <div class="col-lg-12"> <div class="form-group input-group col-lg-4 has-warning"> <span class="input-group-addon"> Resolution FWHM <small>(resolution@mass)</small> </span> <input id="add1spectrum-analyzer-ms-resolutionFWHM-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-peaksMSForm-peaklist is-optional" placeholder="e.g. 6500@1000" /> </div> <div class="form-group input-group col-lg-4 has-error"> <span class="input-group-addon"> m/z range <small>(ppm) from / to</small> </span> <input style="width: 100px;" id="add1spectrum-peaksMS-rangeFrom-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum-peaksMSForm-peaklist add1spectrum is-mandatory" placeholder="50" value="{{ DEFAULT_MIN_MZ }}" /> <input style="width: 100px;" id="add1spectrum-peaksMS-rangeTo-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum-peaksMSForm-peaklist add1spectrum is-mandatory" placeholder="500" value="{{ DEFAULT_MAX_MZ }}" /> </div> <div class="form-group input-group col-lg-4 has-error"> <span class="input-group-addon"> retention time (min) <small>from / to</small> </span> <input style="width: 100px;" id="add1spectrum-peaksMS-rtMinFrom-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum-peaksMSForm-peaklist add1spectrum is-mandatory" placeholder="0.9" value="{{ DEFAULT_MIN_RT }}" /> <input style="width: 100px;" id="add1spectrum-peaksMS-rtMinTo-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum-peaksMSForm-peaklist add1spectrum is-mandatory" placeholder="1.4" value="{{ DEFAULT_MAX_RT }}" /> </div> </div> <div class="col-lg-12"> <div class="form-group input-group col-lg-4 has-warning"> <span class="input-group-addon"> retention time (% solvant) <small>from / to</small> </span> <input style="width: 100px;" id="add1spectrum-peaksMS-rtSolvFrom-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum-peaksMSForm-peaklist add1spectrum is-optional" placeholder="??" /> <input style="width: 100px;" id="add1spectrum-peaksMS-rtSolvTo-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum-peaksMSForm-peaklist add1spectrum is-optional" placeholder="??" /> </div> <div class="col-lg-4"> </div> <div class="col-lg-4"> </div> </div> <div class="col-lg-12"> <div> <ul class="col-lg-12 nav nav-tabs" style=" margin-bottom: 15px; float:left; height:42px; margin-left:20px;" > {{ TAB_LIST_PLACEHOLDER }} </ul> <div class="tab-content" style="float: left;"> {{ ADD_SPECTRUM_FORM }} </div> </div> </div> <div class="col-lg-12"> <div class="col-lg-8"> <button class="btn btn-success add1spectrum" onclick="$('#add1spectrum-peaksMS-msPrecursorIon-{{ TAB_INDEX_PLACEHOLDER }}').change()" >check</button> <button id="btnSwitch-gotoStep5-ms-{{ TAB_INDEX_PLACEHOLDER }}" onclick="$('#open_tab_1').click();setTimeout(()=>ctx().switchToStep(5), 100);" class="btn switchStep btn-primary" ><i class="fa fa-arrow-circle-down"></i> Next!</button> <br> <br> </div> <div class="col-lg-4"> </div> </div> </div> </div> </div> <div id="add1spectrum-otherData-{{ TAB_INDEX_PLACEHOLDER }}" class="panel panel-default" style="display: none;" > <div class="panel-heading panel-success"> <h4 class="panel-title"> <a id="linkActivateStep5-{{ TAB_INDEX_PLACEHOLDER }}" data-toggle="collapse" data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}" href="#step5-{{ TAB_INDEX_PLACEHOLDER }}"> Other <i id="step5sign-{{ TAB_INDEX_PLACEHOLDER }}" class="fa fa-question-circle"></i> </a> </h4> </div> <div id="step5-{{ TAB_INDEX_PLACEHOLDER }}" class="panel-collapse collapse"> <div class="panel-bodỵ"> <div class="col-lg-12"> <div class="col-lg-6"> <div class="panel panel-default"> <div class="panel-heading"> <h3 class="panel-title">Ownership</h3> </div> <div class="panel-bodỵ"> <div class="form-group input-group has-error"> <span class="input-group-addon">data author(s)</span> <input id="add1spectrum-other-author-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-otherForm is-mandatory" placeholder="enter your lab. / plateforme name" value="" /> </div> <div class="form-group input-group has-warning"> <span class="input-group-addon">data validator(s)</span> <input id="add1spectrum-other-validator-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-otherForm is-optional" placeholder="name of the personne who checked all data in this file" /> </div> <div class="form-group input-group has-warning"> <span class="input-group-addon">acquisition date</span> <input id="add1spectrum-other-date-{{ TAB_INDEX_PLACEHOLDER }}" data-date-format="yyyy-mm-dd" type="text" class="form-control add1spectrum add1spectrum-otherForm datepicker is-optional" value="" placeholder="2022-11-04" /> </div> <div class="form-group input-group has-warning"> <span class="input-group-addon">data ownership</span> <input id="add1spectrum-other-owner-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-otherForm is-optional" placeholder="enter your lab. / plateforme name & sample provider;" /> </div> </div> </div> </div> <div class="col-lg-6"> <div class="panel panel-default"> <div class="panel-heading"> <h3 class="panel-title">Raw File</h3> </div> <div class="panel-bodỵ"> <div class="form-group input-group has-warning"> <span class="input-group-addon">raw file name</span> <input id="add1spectrum-other-fileName-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-otherForm is-optional" placeholder="needed to retrieve file later" /> </div> <div class="form-group input-group has-warning"> <span class="input-group-addon">raw file size (Ko)</span> <input id="add1spectrum-other-fileSize-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-otherForm is-optional" placeholder="optional, to check if the file is correct" /> </div> </div> </div> </div> </div> <div class="col-lg-12"> <div class="col-lg-8"> <br> <button id="btnSwitch-gotoStep6-{{ TAB_INDEX_PLACEHOLDER }}" onclick="ctx().switchToStep(6);" class="btn btn-disabled switchStep" disabled="" > <i class="fa fa-arrow-circle-right"></i> Validate this compound/mix! </button> <span id="import1SpectrumLoadingBare-{{ TAB_INDEX_PLACEHOLDER }}" style="display: none;"><img src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/img/ajax-loader.gif" title="please wait" ></span> <span id="import1SpectrumResults-{{ TAB_INDEX_PLACEHOLDER }}" style="display: none;" > <button id="btnSwitch-view-{{ TAB_INDEX_PLACEHOLDER }}" data-toggle="modal" data-target="#modalShowSpectra-{{ TAB_INDEX_PLACEHOLDER }}" class="btn btn-success" > <i class="fa fa-eye"></i> View spectrum </button> <button id="btnSwitch-returntoStep3-{{ TAB_INDEX_PLACEHOLDER }}" onclick="ctx().switchToStep(3);" class="btn btn-primary" > <i class="fa fa-arrow-circle-up"></i> Add new peaklist! </button> </span> </div> <div class="col-lg-4"> <br> <br> <br> </div> </div> <div class="col-lg-12"> <div class="col-lg-8"> <div id="alertBoxSubmitSpectrum-{{ TAB_INDEX_PLACEHOLDER }}" class="col-lg-6" ></div> </div> <div class="col-lg-4"> </div> </div> </div> </div> </div> <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/handsontable/dist/handsontable.full.min.js"></script> <link rel="stylesheet" media="screen" href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/handsontable/dist/handsontable.full.min.css" > <link rel="stylesheet" media="screen" href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/handsontable/bootstrap/handsontable.bootstrap.min.css" > <div class="modal" id="modalPickCompound-{{ TAB_INDEX_PLACEHOLDER }}" tabindex="-1" role="dialog" aria-labelledby="modalPickCompoundLabel-{{ TAB_INDEX_PLACEHOLDER }}" aria-hidden="true" > <div class="modal-dialog"> <div class="modal-content"> <div class="modal-header"> <button type="button" class="close" data-dismiss="modal" aria-hidden="true" >×</button> <h4 class="modal-title" id="modalPickCompoundLabel-{{ TAB_INDEX_PLACEHOLDER }}" > Pick a compound </h4> </div> <div class="modal-body"> <div class="form-group input-group"> <span class="input-group-addon">Compound Name</span> <input id="add-one-cc-s1-value-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control" placeholder="e.g. Caffeine" type="text" /> <span class="input-group-btn"> <button class="btn btn-default" type="button" onclick="ctx().searchLocalCompound();" > <i class="fa fa-search"></i> </button> </span> </div> <div id="load-step-1-{{ TAB_INDEX_PLACEHOLDER }}" style="display: none;"> <img src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/img/ajax-loader.gif" title="please wait"> </div> <div id="ok-step-1-{{ TAB_INDEX_PLACEHOLDER }}" style="overflow: auto; max-height: 300px;" ></div> </div> <div class="modal-footer"> <button type="button" class="btn btn-danger" data-dismiss="modal" onclick="ctx().clearLine()" > <i class="fa fa-eraser"></i> Clear </button> <button type="button" class="btn btn-default" data-dismiss="modal" >Fermer</button> </div> </div> </div> </div> <div class="modal " id="modalShowSpectra-{{ TAB_INDEX_PLACEHOLDER }}" tabindex="-1" role="dialog" aria-labelledby="modalShowSpectraLabel-{{ TAB_INDEX_PLACEHOLDER }}" aria-hidden="true" > <div class="modal-dialog"> <div class="modal-content"> <div class="modal-header"> <button type="button" class="close" data-dismiss="modal" aria-hidden="true" >×</button> <h4 class="modal-title" id="modalShowSpectraLabel-{{ TAB_INDEX_PLACEHOLDER }}" >Modal title</h4> </div> <div class="modal-body"> <div class="te"></div> </div> <div class="modal-footer"> </div> </div> </div> </div> </div> </div> </div> <div id="send_buttons_div"> <button onclick="send_everything_to_peakforest('{{ PF_URL_PLACEHOLDER }}', '{{ PF_TOKEN_PLACEHOLDER }}')" class="btn btn-success" > <i class="fa fa-arrow-circle-right"></i> Send everything to peakforest! </button> <button class="btn btn-validate" onclick="ctx().exit()"> Close MS2PF </button> </div> <script type="text/javascript" src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/jqueryform/2.8/jquery.form.min.js" ></script> <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/md5.min.js" ></script> </div> <nav class="navbar navbar-default navbar-fixed-bottom navbar-inverse navbar-main" role="navigation"> <div class="navbar-header navbar-inverse footer"> <ul id="ul-info-footer" class="nav navbar-nav"> <li class="li-info-footer"><a id="linkcontact" href="mailto:contact@peakforest.org?subject=%5Babout%20peakforest%20webapp%5D">Contact</a></li> <li class="li-info-footer"> <a id="about-peakforest" href="about-peakforest" data-toggle="modal" data-target="#modalAbout">À propos</a> </li> <li class="li-info-footer"> <a href="https://peakforest.org/mypeakforest" target="_blank">Ma PeakForest</a> </li> <li class="li-info-footer"> <a href="http://metabohub.fr" target="_blank">metaboHUB</a> </li> </ul> </div> </nav> <div class="modal" id="modalAbout" tabindex="-1" role="dialog" aria-labelledby="modalAboutLabel" aria-hidden="true" > <div class="modal-dialog"> <div class="modal-content"> <div class="modal-header"> <button type="button" class="close" data-dismiss="modal" aria-hidden="true" >×</button> <h4 class="modal-title" id="modalAboutLabel">À propos de la Base de Données PeakForest</h4> </div> <div class="modal-body"> <div class="te"></div> </div> <div class="modal-footer"> </div> </div> </div> </div> <div class="modal" id="modalMyPeakForest" tabindex="-1" role="dialog" aria-labelledby="modalMyPFLabel" aria-hidden="true" > <div class="modal-dialog"> <div class="modal-content"> <div class="modal-header"> <button type="button" class="close" data-dismiss="modal" aria-hidden="true">×</button> <h4 class="modal-title" id="modalAboutLabel">Ma base de Données PeakForest</h4> </div> <div class="modal-body"> <div class="te"></div> </div> <div class="modal-footer"> </div> </div> </div> </div> {{ EMBED_JS }} <script type="text/javascript">context = context_1 ;</script> </body> </html>