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comparison Dockerfile.planemo @ 0:15c9fbefeaf1 draft

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" master branch Updating"
author lain
date Tue, 01 Feb 2022 14:19:30 +0000
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-1:000000000000 0:15c9fbefeaf1
1
2 FROM python:3.8-buster
3
4 # set author
5 MAINTAINER Lain Pavot <lain.pavot@inra.fr>
6
7 # set encoding
8 ENV LC_ALL en_US.UTF-8
9 ENV LANG en_US.UTF-8
10
11 ENV PLANEMO_VENV_LOCATION /planemo-venv
12 ENV CONDA /tmp/conda
13
14 RUN \
15 apt-get update \
16 && apt-get install -y --no-install-recommends \
17 ed \
18 less \
19 locales \
20 vim-tiny \
21 wget \
22 ca-certificates \
23 fonts-texgyre \
24 && echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen \
25 && locale-gen en_US.utf8 \
26 && /usr/sbin/update-locale LANG=en_US.UTF-8 \
27 && echo "deb http://http.debian.net/debian buster main" > /etc/apt/sources.list.d/debian-unstable.list \
28 && echo 'APT::Default-Release "buster";' > /etc/apt/apt.conf.d/default \
29 && echo 'APT::Install-Recommends "false";' > /etc/apt/apt.conf.d/90local-no-recommends \
30 && apt-get update \
31 && apt-get upgrade -y \
32 && apt-get install -y --no-install-recommends \
33 git \
34 littler \
35 libhdf5-dev \
36 r-cran-littler \
37 r-base \
38 r-base-dev \
39 r-recommended \
40 python-virtualenv \
41 && R -e 'install.packages("batch", repos="http://cran.us.r-project.org")' \
42 && pip install virtualenv \
43 && python -m virtualenv "$PLANEMO_VENV_LOCATION" \
44 && . "$PLANEMO_VENV_LOCATION"/bin/activate \
45 && pip install --upgrade pip setuptools \
46 && pip install planemo numpy \
47 && planemo conda_init --conda_prefix "$CONDA" \
48 && apt-get clean autoclean \
49 && apt-get autoremove --yes \
50 && rm -rf /var/lib/{apt,dpkg,cache,log}/ \
51 && rm -rf /usr/bin/X11 \
52 && rm -rf /tmp/* ;
53
54 CMD []
55