--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/resources/XSeeker/config/config.yml	Tue Feb 01 14:19:30 2022 +0000
@@ -0,0 +1,100 @@
+
+
+default:
+
+
+  XSeeker_path: "/XSeeker"
+  input_directory: "{{XSeeker_path}}/input/"
+
+
+  galaxy:
+    active: TRUE
+    export_directory: "{{XSeeker_path}}/output/"
+    export_method: "directory"
+
+
+  database:
+    base_data: "{{XSeeker_path}}/data/base.sql"
+    recreate: FALSE
+    models: 
+      adduct
+      cluster
+      compound
+      feature
+      instrument
+      instrument_config
+      project
+      sample
+      smol_xcms_set
+      software
+      camera_parameters
+      pairing_parameters
+      peak_picking_parameters
+      alignmenmt_parameters
+    models_definition_path: "{{XSeeker_path}}/config/models.R"
+    connection:
+      connector: "SQLite"
+      dbname: "{{XSeeker_path}}/test.sqlite"
+
+
+  shiny:
+    host: "0.0.0.0"
+    port: 8765
+    show_errors: TRUE
+    appname: "XSeeker"
+    base_ui_path: "{{XSeeker_path}}/R/base_ui.R"
+    added_resources:
+      www: "{{XSeeker_path}}/www/"
+      sbs: "{{XSeeker_path}}/dist/shinyBS/www/"
+
+
+  modules:
+    checksums_file: "{{XSeeker_path}}/.checksums"
+    re_compile_modified: FALSE
+    sources_location: "{{XSeeker_path}}/modules"
+    binaries_location: "{{XSeeker_path}}/bin"
+    binaries:
+      XSeekerRdataManager
+      XSeekerFilePreProcessing
+      XSeekerPreProcessPeakPicking
+      XSeekerPreProcessAlignment
+      XSeekerPreProcessCamera
+      XSeekerKMDPlot
+      XSeekerComputeFormula
+      XSeekerChromatoAndMassSpectrum
+      XSeekerClusterTable
+      XSeekerDatabaseManager
+      XSeekerDatabaseSummary
+      XSeekerHairyPlotter
+      XSeekerGalaxyInterfacR
+
+    sources:
+
+
+  XSeekerRdataManager:
+    autoload: TRUE
+    download_rdata_mzml_from_galaxy: FALSE
+
+
+production:
+
+  database:
+    recreate: FALSE
+    connection:
+      connector: "SQLite"
+      dbname: "{{XSeeker_path}}/production.sqlite"
+
+  modules:
+    re_compile_modified: FALSE
+
+
+docker:
+
+  database:
+    recreate: TRUE
+    connection:
+      connector: "SQLite"
+      dbname: "file::memory:"
+
+  modules:
+    re_compile_modified: FALSE