Mercurial > repos > lain > xseekerpreparator
diff Dockerfile @ 0:a174cbbb12dd draft
" master branch Updating"
| author | lain |
|---|---|
| date | Tue, 24 Nov 2020 18:55:08 +0000 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Dockerfile Tue Nov 24 18:55:08 2020 +0000 @@ -0,0 +1,56 @@ + +FROM python:3.8-buster + +# set author +MAINTAINER Lain Pavot <lain.pavot@inra.fr> + +# set encoding +ENV LC_ALL en_US.UTF-8 +ENV LANG en_US.UTF-8 +ENV R_BASE_VERSION 4.0.3 + +ENV PLANEMO_VENV_LOCATION /planemo-venv +ENV CONDA /tmp/conda + +RUN \ + apt-get update \ + && apt-get install -y --no-install-recommends \ + ed \ + less \ + locales \ + vim-tiny \ + wget \ + ca-certificates \ + fonts-texgyre \ + && echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen \ + && locale-gen en_US.utf8 \ + && /usr/sbin/update-locale LANG=en_US.UTF-8 \ + && echo "deb http://http.debian.net/debian buster main" > /etc/apt/sources.list.d/debian-unstable.list \ + && echo 'APT::Default-Release "stable";' > /etc/apt/apt.conf.d/default \ + && echo 'APT::Install-Recommends "false";' > /etc/apt/apt.conf.d/90local-no-recommends \ + && apt-get update \ + && apt-get upgrade -y \ + && apt-get install -y --no-install-recommends \ + git \ + littler \ + libhdf5-dev \ + r-cran-littler \ + r-base \ + r-base-dev \ + r-recommended \ + python-virtualenv \ + && R -e 'install.packages("batch", repos="http://cran.us.r-project.org")' \ + && pip install virtualenv \ + && python -m virtualenv "$PLANEMO_VENV_LOCATION" \ + && . "$PLANEMO_VENV_LOCATION"/bin/activate \ + && pip install --upgrade pip setuptools \ + && pip install planemo numpy \ + && planemo conda_init --conda_prefix "$CONDA" \ + && apt-get clean autoclean \ + && apt-get autoremove --yes \ + && rm -rf /var/lib/{apt,dpkg,cache,log}/ \ + && rm -rf /usr/bin/X11 \ + && rm -rf /tmp/* ; + +CMD [] +