Mercurial > repos > lain > xseekerpreparator
view data/models.R @ 20:ce94e7a141bb draft default tip
" master branch Updating"
author | lain |
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date | Tue, 06 Dec 2022 10:18:10 +0000 |
parents | 2937e72e5891 |
children |
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tryCatch({ DBModelR::ModelDefinition(table = "yui", fields = list(yui = "INTEGER")) }, error = function(e) { stop("Please, install DBModelR before you source this file.") }) list( adduct = DBModelR::ModelDefinition( table = "adduct", fields = list( name = "TEXT", mass = "FLOAT", charge = "INTEGER", multi = "INTEGER", formula_add = "TEXT", formula_ded = "TEXT", sign = "TEXT", oidscore = "INTEGER", quasi = "INTEGER", ips = "FLOAT" ) ), cluster = DBModelR::ModelDefinition( table = "cluster", fields = list( clusterID = "INTEGER", formula = "TEXT", annotation = "TEXT", coeff = "FLOAT", r_squared = "FLOAT", charge = "INTEGER", mean_rt = "FLOAT", score = "FLOAT", deviation = "FLOAT", status = "TEXT", # adduct = "TEXT", curent_group = "INTEGER", pc_group = "INTEGER", align_group = "INTEGER", xcms_group = "INTEGER" ), one = list("compound", "adduct"), many = list("sample") ), compound = DBModelR::ModelDefinition( table = "compound", fields = list( name = "TEXT", common_name = "TEXT", formula = "TEXT", charge = "INTEGER", date = "TEXT", mz = "FLOAT" ) ), feature = DBModelR::ModelDefinition( table = "feature", fields = list( featureID = "INTEGER", mz = "FLOAT", mz_min = "FLOAT", mz_max = "FLOAT", rt = "FLOAT", rt_min = "FLOAT", rt_max = "FLOAT", int_o = "FLOAT", int_b = "FLOAT", max_o = "FLOAT", iso = "TEXT", abundance = "FLOAT" ), one = list("cluster"), many = list("sample") ), instrument = DBModelR::ModelDefinition( table = "instrument", fields = list( model = "TEXT", manufacturer = "TEXT", analyzer = "TEXT", detector_type = "TEXT", ion_source = "TEXT" ) ), instrument_config = DBModelR::ModelDefinition( table = "instrument_config", fields = list( resolution = "TEXT", agc_target = "TEXT", maximum_IT = "TEXT", number_of_scan_range = "TEXT", scan_range = "TEXT", version = "TEXT" ) ), project = DBModelR::ModelDefinition( table = "project", fields = list( name = "TEXT", comment = "TEXT" ), one = list("sample") ), sample = DBModelR::ModelDefinition( table = "sample", fields = list( name = "TEXT", path = "TEXT", polarity = "TEXT", kind = "TEXT", ## rdata or mxml or enriched_rdata raw = "BLOB" ), one = list( "peak_picking_parameters", "pairing_parameters", "alignmenmt_parameters", "camera_parameters", "instrument", "instrument_config", "software", "smol_xcms_set" ) ), smol_xcms_set = DBModelR::ModelDefinition( table = "smol_xcms_set", fields = list( raw = "BLOB" ) ), software = DBModelR::ModelDefinition( table = "software", fields = list( name = "TEXT", version = "TEXT" ) ), peak_picking_parameters = DBModelR::ModelDefinition( table = "peak_picking_parameters", fields = list( ppm = "FLOAT", peakwidth = "TEXT", snthresh = "TEXT", prefilterStep = "TEXT", prefilterLevel = "TEXT", mzdiff = "TEXT", fitgauss = "TEXT", noise = "TEXT", mzCenterFun = "TEXT", integrate = "INTEGER", firstBaselineCheck = "TEXT", snthreshIsoROIs = "TEXT", maxCharge = "INTEGER", maxIso = "INTEGER", mzIntervalExtension = "TEXT" ) ), alignmenmt_parameters = DBModelR::ModelDefinition( table = "alignmenmt_parameters", fields = list( binSize = "TEXT", centerSample = "TEXT", response = "TEXT", distFun = "TEXT", gapInit = "TEXT", gapExtend = "TEXT", factorDiag = "TEXT", factorGap = "TEXT", localAlignment = "INTEGER", initPenalty = "TEXT", bw = "TEXT", minFraction = "TEXT", minSamples = "TEXT", maxFeatures = "TEXT" ) ) )