Mercurial > repos > lecorguille > camera_annotate
annotate planemo_test.sh @ 9:7da9252dd983 draft
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
author | lecorguille |
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date | Mon, 25 Apr 2016 11:06:25 -0400 |
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children | 8dd6f0ffa763 |
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planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
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1 # Example of planemo command to launch test |
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2 |
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3 # Note: --galaxy_branch "dev" is set to deal with zip file |
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4 |
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planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
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5 |
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planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
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6 # -- Use of installed package environments |
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7 # after having installing package on a local galaxy instance |
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8 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh |
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9 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-camera/1.22.0/lecorguille/package_bioconductor_camera_1_22_0/22cec61d66c2/env.sh |
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planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
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10 planemo test --install_galaxy --galaxy_branch "dev" |
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11 |
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12 #All 1 test(s) executed passed. |
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13 #abims_CAMERA_annotateDiffreport[0]: passed |
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planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
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14 |
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15 |
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lecorguille
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16 # -- Use of conda dependencies |
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17 planemo conda_init --conda_prefix /tmp/mc |
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18 planemo conda_install --conda_prefix /tmp/mc . |
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19 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution --galaxy_branch "dev" |
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20 |
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21 #All 1 test(s) executed passed. |
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22 #abims_CAMERA_annotateDiffreport[0]: passed |
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planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
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23 |
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24 |
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25 # -- Use of shed_test |
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26 planemo shed_test --install_galaxy -t testtoolshed --galaxy_branch "dev" |
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27 |
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planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
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28 #All 1 test(s) executed passed. |
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planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
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29 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.1.3[0]: passed |