Mercurial > repos > lecorguille > camera_annotate

comparison CAMERA_annotateDiffreport.r @ 19:01459b73daf9 draft

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"planemo upload commit 4fcbbcbc6d6b0a59e801870d31fe886a920ef429"
author workflow4metabolomics
date Thu, 13 Feb 2020 17:23:07 -0500
parents cb923396e70f
children abf1775ac14d
comparison
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18:cb923396e70f 19:01459b73daf9
43 zipfile = rawFilePath$zipfile 43 zipfile = rawFilePath$zipfile
44 singlefile = rawFilePath$singlefile 44 singlefile = rawFilePath$singlefile
45 args = rawFilePath$args 45 args = rawFilePath$args
46 directory = retrieveRawfileInTheWorkingDirectory(singlefile, zipfile) 46 directory = retrieveRawfileInTheWorkingDirectory(singlefile, zipfile)
47 47
48
48 # Because so far CAMERA isn't compatible with the new XCMSnExp object 49 # Because so far CAMERA isn't compatible with the new XCMSnExp object
49 if (exists("xdata")){ 50 if (exists("xdata")){
50 xset <- getxcmsSetObject(xdata) 51 xset <- getxcmsSetObject(xdata)
51 } 52 }
52 53