Mercurial > repos > lecorguille > camera_annotate
comparison planemo_test.sh @ 9:7da9252dd983 draft
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
author | lecorguille |
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date | Mon, 25 Apr 2016 11:06:25 -0400 |
parents | |
children | 8dd6f0ffa763 |
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8:8c5bb7b86df9 | 9:7da9252dd983 |
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1 # Example of planemo command to launch test | |
2 | |
3 # Note: --galaxy_branch "dev" is set to deal with zip file | |
4 | |
5 | |
6 # -- Use of installed package environments | |
7 # after having installing package on a local galaxy instance | |
8 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh | |
9 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-camera/1.22.0/lecorguille/package_bioconductor_camera_1_22_0/22cec61d66c2/env.sh | |
10 planemo test --install_galaxy --galaxy_branch "dev" | |
11 | |
12 #All 1 test(s) executed passed. | |
13 #abims_CAMERA_annotateDiffreport[0]: passed | |
14 | |
15 | |
16 # -- Use of conda dependencies | |
17 planemo conda_init --conda_prefix /tmp/mc | |
18 planemo conda_install --conda_prefix /tmp/mc . | |
19 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution --galaxy_branch "dev" | |
20 | |
21 #All 1 test(s) executed passed. | |
22 #abims_CAMERA_annotateDiffreport[0]: passed | |
23 | |
24 | |
25 # -- Use of shed_test | |
26 planemo shed_test --install_galaxy -t testtoolshed --galaxy_branch "dev" | |
27 | |
28 #All 1 test(s) executed passed. | |
29 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.1.3[0]: passed |