Mercurial > repos > lecorguille > camera_annotate

comparison abims_CAMERA_annotateDiffreport.xml @ 10:8dd6f0ffa763 draft

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planemo upload commit 62670148178273a855c42e85438ce731548ada48-dirty
author lecorguille
date Mon, 04 Jul 2016 08:52:04 -0400
parents 7da9252dd983
children 1c30ff90f3ae
comparison
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9:7da9252dd983 10:8dd6f0ffa763
45 h $options.h 45 h $options.h
46 w $options.w 46 w $options.w
47 mzdec $options.mzdec 47 mzdec $options.mzdec
48 new_file_path ${__new_file_path__}/primary_${output_diffreport.id}_ 48 new_file_path ${__new_file_path__}/primary_${output_diffreport.id}_
49 #end if 49 #end if
50 50
51 #if $zip_file: 51 @COMMAND_ZIPFILE_LOAD@
52 zipfile $zip_file
53 #end if
54 52
55 ]]></command> 53 ]]></command>
56 54
57 <inputs> 55 <inputs>
58 56
124 <param name="sortpval" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="diffreport: logical indicating whether the reports should be sorted by p-value" help="[sortpval]"/> 122 <param name="sortpval" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="diffreport: logical indicating whether the reports should be sorted by p-value" help="[sortpval]"/>
125 </when> 123 </when>
126 <when value="hide"> 124 <when value="hide">
127 </when> 125 </when>
128 </conditional> 126 </conditional>
129 127
130 <!-- To pass planemo test --> 128 <expand macro="zipfile_load"/>
131 <param name="zip_file" type="data" format="no_unzip.zip,zip" label="Zip file" help="Use only if you get a message which say that your original zip file have been deleted on the server." />
132 </inputs> 129 </inputs>
133 130
134 <outputs> 131 <outputs>
135 <data name="variableMetadata" format="tabular" label="${image.name[:-6]}.annotate.variableMetadata.tsv" /> 132 <data name="variableMetadata" format="tabular" label="${image.name[:-6]}.annotate.variableMetadata.tsv" />
136 <data name="datamatrix" format="tabular" label="${image.name[:-6]}.annotate.dataMatrix.tsv" /> 133 <data name="datamatrix" format="tabular" label="${image.name[:-6]}.annotate.dataMatrix.tsv" />
208 <param name="options|value" value="into"/> 205 <param name="options|value" value="into"/>
209 <param name="options|h" value="480"/> 206 <param name="options|h" value="480"/>
210 <param name="options|w" value="640"/> 207 <param name="options|w" value="640"/>
211 <param name="options|mzdec" value="2"/> 208 <param name="options|mzdec" value="2"/>
212 <param name="options|sortpval" value="False"/> 209 <param name="options|sortpval" value="False"/>
213 <param name="zip_file" value="faahKO_reduce.zip" ftype="zip" /> 210 <param name="zipfile_load_conditional|zipfile_load_select" value="yes" />
211 <param name="zipfile_load_conditional|zip_file" value="faahKO_reduce.zip" ftype="zip" />
214 <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" /> 212 <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" />
215 <output name="datamatrix" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix.tsv" /> 213 <output name="datamatrix" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix.tsv" />
216 </test> 214 </test>
217 </tests> 215 </tests>
218 216