Mercurial > repos > lecorguille > camera_annotate
comparison abims_CAMERA_annotateDiffreport.xml @ 10:8dd6f0ffa763 draft
planemo upload commit 62670148178273a855c42e85438ce731548ada48-dirty
author | lecorguille |
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date | Mon, 04 Jul 2016 08:52:04 -0400 |
parents | 7da9252dd983 |
children | 1c30ff90f3ae |
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9:7da9252dd983 | 10:8dd6f0ffa763 |
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45 h $options.h | 45 h $options.h |
46 w $options.w | 46 w $options.w |
47 mzdec $options.mzdec | 47 mzdec $options.mzdec |
48 new_file_path ${__new_file_path__}/primary_${output_diffreport.id}_ | 48 new_file_path ${__new_file_path__}/primary_${output_diffreport.id}_ |
49 #end if | 49 #end if |
50 | 50 |
51 #if $zip_file: | 51 @COMMAND_ZIPFILE_LOAD@ |
52 zipfile $zip_file | |
53 #end if | |
54 | 52 |
55 ]]></command> | 53 ]]></command> |
56 | 54 |
57 <inputs> | 55 <inputs> |
58 | 56 |
124 <param name="sortpval" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="diffreport: logical indicating whether the reports should be sorted by p-value" help="[sortpval]"/> | 122 <param name="sortpval" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="diffreport: logical indicating whether the reports should be sorted by p-value" help="[sortpval]"/> |
125 </when> | 123 </when> |
126 <when value="hide"> | 124 <when value="hide"> |
127 </when> | 125 </when> |
128 </conditional> | 126 </conditional> |
129 | 127 |
130 <!-- To pass planemo test --> | 128 <expand macro="zipfile_load"/> |
131 <param name="zip_file" type="data" format="no_unzip.zip,zip" label="Zip file" help="Use only if you get a message which say that your original zip file have been deleted on the server." /> | |
132 </inputs> | 129 </inputs> |
133 | 130 |
134 <outputs> | 131 <outputs> |
135 <data name="variableMetadata" format="tabular" label="${image.name[:-6]}.annotate.variableMetadata.tsv" /> | 132 <data name="variableMetadata" format="tabular" label="${image.name[:-6]}.annotate.variableMetadata.tsv" /> |
136 <data name="datamatrix" format="tabular" label="${image.name[:-6]}.annotate.dataMatrix.tsv" /> | 133 <data name="datamatrix" format="tabular" label="${image.name[:-6]}.annotate.dataMatrix.tsv" /> |
208 <param name="options|value" value="into"/> | 205 <param name="options|value" value="into"/> |
209 <param name="options|h" value="480"/> | 206 <param name="options|h" value="480"/> |
210 <param name="options|w" value="640"/> | 207 <param name="options|w" value="640"/> |
211 <param name="options|mzdec" value="2"/> | 208 <param name="options|mzdec" value="2"/> |
212 <param name="options|sortpval" value="False"/> | 209 <param name="options|sortpval" value="False"/> |
213 <param name="zip_file" value="faahKO_reduce.zip" ftype="zip" /> | 210 <param name="zipfile_load_conditional|zipfile_load_select" value="yes" /> |
211 <param name="zipfile_load_conditional|zip_file" value="faahKO_reduce.zip" ftype="zip" /> | |
214 <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" /> | 212 <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" /> |
215 <output name="datamatrix" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix.tsv" /> | 213 <output name="datamatrix" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix.tsv" /> |
216 </test> | 214 </test> |
217 </tests> | 215 </tests> |
218 | 216 |