Mercurial > repos > lecorguille > camera_annotate

comparison planemo_test.sh @ 10:8dd6f0ffa763 draft

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planemo upload commit 62670148178273a855c42e85438ce731548ada48-dirty
author lecorguille
date Mon, 04 Jul 2016 08:52:04 -0400
parents 7da9252dd983
children
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9:7da9252dd983 10:8dd6f0ffa763
5 5
6 # -- Use of installed package environments 6 # -- Use of installed package environments
7 # after having installing package on a local galaxy instance 7 # after having installing package on a local galaxy instance
8 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh 8 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh
9 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-camera/1.22.0/lecorguille/package_bioconductor_camera_1_22_0/22cec61d66c2/env.sh 9 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-camera/1.22.0/lecorguille/package_bioconductor_camera_1_22_0/22cec61d66c2/env.sh
10 planemo test --install_galaxy --galaxy_branch "dev" 10 planemo test --install_galaxy
11 11
12 #All 1 test(s) executed passed. 12 #All 1 test(s) executed passed.
13 #abims_CAMERA_annotateDiffreport[0]: passed 13 #abims_CAMERA_annotateDiffreport[0]: passed
14 14
15 15
16 # -- Use of conda dependencies 16 # -- Use of conda dependencies
17 planemo conda_init --conda_prefix /tmp/mc 17 planemo conda_init --conda_prefix /tmp/mc
18 planemo conda_install --conda_prefix /tmp/mc . 18 planemo conda_install --conda_prefix /tmp/mc .
19 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution --galaxy_branch "dev" 19 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution
20 20
21 #All 1 test(s) executed passed. 21 #All 1 test(s) executed passed.
22 #abims_CAMERA_annotateDiffreport[0]: passed 22 #abims_CAMERA_annotateDiffreport[0]: passed
23 23
24 24
25 # -- Use of shed_test 25 # -- Use of shed_test
26 planemo shed_test --install_galaxy -t testtoolshed --galaxy_branch "dev" 26 planemo shed_test --install_galaxy -t testtoolshed
27 27
28 #All 1 test(s) executed passed. 28 #All 1 test(s) executed passed.
29 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.1.3[0]: passed 29 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.1.3[0]: passed