Mercurial > repos > lecorguille > camera_annotate

comparison abims_CAMERA_annotateDiffreport.xml @ 16:a2c49996603e draft

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planemo upload commit e440674afa3e58c46100b0ac7c305a6f46ecbbdc
author lecorguille
date Wed, 19 Sep 2018 03:22:21 -0400
parents 6139bfcc95cb
children 73d82de36369
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15:6139bfcc95cb 16:a2c49996603e
1 <tool id="abims_CAMERA_annotateDiffreport" name="CAMERA.annotate" version="2.2.2"> 1 <tool id="abims_CAMERA_annotateDiffreport" name="CAMERA.annotate" version="2.2.3">
2 2
3 <description>CAMERA annotate function. Returns annotation results (isotope peaks, adducts and fragments) and a diffreport if more than one condition.</description> 3 <description>CAMERA annotate function. Returns annotation results (isotope peaks, adducts and fragments) and a diffreport if more than one condition.</description>
4 4
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
189 <discover_datasets pattern="__designation_and_ext__" directory="tabular" visible="true" /> 189 <discover_datasets pattern="__designation_and_ext__" directory="tabular" visible="true" />
190 </data> 190 </data>
191 </outputs> 191 </outputs>
192 192
193 <tests> 193 <tests>
194 <test> 194 <!--<test>
195 <param name="image" value="faahKO.xset.group.retcor.group.fillpeaks.RData"/> 195 <param name="image" value="faahKO.xset.group.retcor.group.fillpeaks.RData"/>
196 <expand macro="test_annotate_diffreport"/> 196 <expand macro="test_annotate_diffreport"/>
197 <expand macro="test_annotate_quick_true"/> 197 <expand macro="test_annotate_quick_true"/>
198 <expand macro="test_file_load_zip"/> 198 <expand macro="test_file_load_zip"/>
199 <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" /> 199 <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" />
200 <output name="datamatrix" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix.tsv" /> 200 <output name="datamatrix" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix.tsv" />
201 </test> 201 </test>-->
202 <test> 202 <test>
203 <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks.RData"/> 203 <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks.RData"/>
204 <expand macro="test_annotate_diffreport"/> 204 <expand macro="test_annotate_diffreport"/>
205 <expand macro="test_annotate_quick_true"/> 205 <expand macro="test_annotate_quick_true"/>
206 <expand macro="test_file_load_single"/> 206 <expand macro="test_file_load_single"/>
207 <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" /> 207 <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" />
208 <output name="datamatrix" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix.tsv" /> 208 <output name="datamatrix" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix.tsv" />
209 </test>
210 <test>
211 <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks-xcms3.RData"/>
212 <expand macro="test_annotate_diffreport"/>
213 <expand macro="test_annotate_quick_true"/>
214 <expand macro="test_file_load_single"/>
215 <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata-xcms3.tsv" />
216 <output name="datamatrix" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix-xcms3.tsv" />
209 </test> 217 </test>
210 <test> 218 <test>
211 <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks.RData"/> 219 <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks.RData"/>
212 <expand macro="test_annotate_diffreport"/> 220 <expand macro="test_annotate_diffreport"/>
213 <conditional name="quick_block"> 221 <conditional name="quick_block">
422 --------------------------------------------------- 430 ---------------------------------------------------
423 431
424 Changelog/News 432 Changelog/News
425 -------------- 433 --------------
426 434
435 **Version 2.2.3 - 30/04/2018**
436
437 - NEW: support the new xcms 3.0.0 wrapper
438
427 **Version 2.2.2 - 01/03/2018** 439 **Version 2.2.2 - 01/03/2018**
428 440
429 - UPGRADE: upgrate the CAMERA version from 1.26.0 to 1.32.0 441 - UPGRADE: upgrate the CAMERA version from 1.26.0 to 1.32.0
430 442
431 **Version 2.2.1 - 29/11/2017** 443 **Version 2.2.1 - 29/11/2017**