Mercurial > repos > lecorguille > camera_annotate

comparison abims_CAMERA_annotateDiffreport.xml @ 23:abf1775ac14d draft

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"planemo upload commit c1e276cf53b3c54d4702ab26d4f40a525a720998"
author workflow4metabolomics
date Thu, 22 Apr 2021 10:27:38 +0000
parents 01bbba6d57ff
children 512c2b701d96
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22:01bbba6d57ff 23:abf1775ac14d
1 <tool id="abims_CAMERA_annotateDiffreport" name="CAMERA.annotate" version="2.2.6+camera@TOOL_VERSION@-galaxy1"> 1 <tool id="abims_CAMERA_annotateDiffreport" name="CAMERA.annotate" version="2.2.6+camera@TOOL_VERSION@-galaxy0">
2 2
3 <description>CAMERA annotate function. Returns annotation results (isotope peaks, adducts and fragments) and a diffreport if more than one condition.</description> 3 <description>CAMERA annotate function. Returns annotation results (isotope peaks, adducts and fragments) and a diffreport if more than one condition.</description>
4 4
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
203 <discover_datasets pattern="__designation_and_ext__" directory="tabular" format="tabular" /> 203 <discover_datasets pattern="__designation_and_ext__" directory="tabular" format="tabular" />
204 </collection> 204 </collection>
205 </outputs> 205 </outputs>
206 206
207 <tests> 207 <tests>
208 <!--<test>
209 <param name="image" value="faahKO.xset.group.retcor.group.fillpeaks.RData"/>
210 <expand macro="test_annotate_diffreport"/>
211 <expand macro="test_annotate_quick_true"/>
212 <expand macro="test_file_load_zip"/>
213 <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" />
214 </test>-->
215 <test> 208 <test>
216 <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks.RData"/> 209 <param name="image" value="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.RData"/>
217 <expand macro="test_annotate_diffreport"/> 210 <expand macro="test_annotate_diffreport"/>
218 <expand macro="test_annotate_quick_true"/> 211 <expand macro="test_annotate_quick_true"/>
219 <expand macro="test_file_load_single"/> 212 <expand macro="test_file_load_single"/>
220 <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" lines_diff="2" /> 213 <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" lines_diff="2" />
221 </test> 214 </test>
222 <test> 215 <test>
223 <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks-xcms3.RData"/> 216 <param name="image" value="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.RData"/>
224 <expand macro="test_annotate_diffreport"/>
225 <expand macro="test_annotate_quick_true"/>
226 <expand macro="test_file_load_single"/>
227 <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata-xcms3.tsv" lines_diff="2" />
228 </test>
229 <test>
230 <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks.RData"/>
231 <expand macro="test_annotate_diffreport"/> 217 <expand macro="test_annotate_diffreport"/>
232 <conditional name="quick_block"> 218 <conditional name="quick_block">
233 <expand macro="test_annotate_quick_false" /> 219 <expand macro="test_annotate_quick_false" />
234 <section name="findadducts"> 220 <section name="findadducts">
235 <param name="polarity" value="negative"/> 221 <param name="polarity" value="negative"/>
434 Changelog/News 420 Changelog/News
435 -------------- 421 --------------
436 422
437 .. _News: https://bioconductor.org/packages/release/bioc/news/CAMERA/NEWS 423 .. _News: https://bioconductor.org/packages/release/bioc/news/CAMERA/NEWS
438 424
425 @HELP_CAMERA_NEWVERSION_1460@
426
439 **Version 2.2.6+camera1.42.0-galaxy1 - 09/03/2020** 427 **Version 2.2.6+camera1.42.0-galaxy1 - 09/03/2020**
440 428
441 - BUGFIX: Fix the zip export of the pictures (eic and boxplot) 429 - BUGFIX: Fix the zip export of the pictures (eic and boxplot)
442 430
443 @HELP_CAMERA_NEWVERSION_1420@ 431 @HELP_CAMERA_NEWVERSION_1420@