Mercurial > repos > lecorguille > camera_annotate

comparison macros.xml @ 18:cb923396e70f draft

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planemo upload commit 459ef7f63e313493aca32441bd821f09e36de48c
author lecorguille
date Thu, 29 Aug 2019 11:38:21 -0400
parents a2c49996603e
children 01459b73daf9
comparison
equal deleted inserted replaced
17:73d82de36369 18:cb923396e70f
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <xml name="requirements"> 3 <xml name="requirements">
4 <requirements> 4 <requirements>
5 <requirement type="package" version="0.4_2">r-snow</requirement> 5 <requirement type="package" version="0.4_3">r-snow</requirement>
6 <requirement type="package" version="3.0.0">bioconductor-xcms</requirement> 6 <requirement type="package" version="1.38.1">bioconductor-camera</requirement>
7 <requirement type="package" version="1.34.0">bioconductor-camera</requirement> 7 <requirement type="package" version="2.38.0">bioconductor-multtest</requirement>
8 <requirement type="package" version="2.28.0">bioconductor-multtest</requirement>
9 <requirement type="package" version="1.1_4">r-batch</requirement> 8 <requirement type="package" version="1.1_4">r-batch</requirement>
10 <requirement type="package" version="1.3.23">graphicsmagick</requirement> 9 <requirement type="package" version="1.3.31">graphicsmagick</requirement>
11 </requirements> 10 </requirements>
12 </xml> 11 </xml>
13 <xml name="stdio"> 12 <xml name="stdio">
14 <stdio> 13 <stdio>
15 <exit_code range="1" level="fatal" /> 14 <exit_code range="1" level="fatal" />
16 </stdio> 15 </stdio>
17 </xml> 16 </xml>
18 17
19 <token name="@COMMAND_CAMERA_SCRIPT@"> 18 <token name="@COMMAND_RSCRIPT@">LC_ALL=C Rscript $__tool_directory__/</token>
20 LC_ALL=C Rscript $__tool_directory__/CAMERA.r
21 </token>
22 19
23 <!-- raw file load for planemo test --> 20 <!-- raw file load for planemo test -->
24 <token name="@COMMAND_FILE_LOAD@"> 21 <token name="@COMMAND_FILE_LOAD@">
25 #if $file_load_section.file_load_conditional.file_load_select == "yes": 22 #if $file_load_section.file_load_conditional.file_load_select == "yes":
26 #if $file_load_section.file_load_conditional.input[0].is_of_type("mzxml") or $file_load_section.file_load_conditional.input[0].is_of_type("mzml") or $file_load_section.file_load_conditional.input[0].is_of_type("mzdata") or $file_load_section.file_load_conditional.input[0].is_of_type("netcdf"): 23 #if $file_load_section.file_load_conditional.input[0].is_of_type("mzxml") or $file_load_section.file_load_conditional.input[0].is_of_type("mzml") or $file_load_section.file_load_conditional.input[0].is_of_type("mzdata") or $file_load_section.file_load_conditional.input[0].is_of_type("netcdf"):