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annotate planemo_test.sh @ 0:ac5f2936575b draft

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planemo upload commit 131562ad89c33a2f87754936ce3c8fe6899484c0
author lecorguille
date Thu, 03 Aug 2017 06:00:00 -0400
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ac5f2936575b planemo upload commit 131562ad89c33a2f87754936ce3c8fe6899484c0
lecorguille
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1 conda create -n r-ipo --use-local r-ipo r-batch
ac5f2936575b planemo upload commit 131562ad89c33a2f87754936ce3c8fe6899484c0
lecorguille
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2 . ~/miniconda2/bin/activate r-ipo
ac5f2936575b planemo upload commit 131562ad89c33a2f87754936ce3c8fe6899484c0
lecorguille
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3 planemo test --install_galaxy --galaxy_branch "dev" --update_test_data
ac5f2936575b planemo upload commit 131562ad89c33a2f87754936ce3c8fe6899484c0
lecorguille
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ac5f2936575b planemo upload commit 131562ad89c33a2f87754936ce3c8fe6899484c0
lecorguille
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ac5f2936575b planemo upload commit 131562ad89c33a2f87754936ce3c8fe6899484c0
lecorguille
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6 # -- Use of conda dependencies
ac5f2936575b planemo upload commit 131562ad89c33a2f87754936ce3c8fe6899484c0
lecorguille
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7 planemo conda_init --conda_prefix /tmp/mc
ac5f2936575b planemo upload commit 131562ad89c33a2f87754936ce3c8fe6899484c0
lecorguille
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8 planemo conda_install --conda_prefix /tmp/mc .
ac5f2936575b planemo upload commit 131562ad89c33a2f87754936ce3c8fe6899484c0
lecorguille
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9 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution
ac5f2936575b planemo upload commit 131562ad89c33a2f87754936ce3c8fe6899484c0
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ac5f2936575b planemo upload commit 131562ad89c33a2f87754936ce3c8fe6899484c0
lecorguille
parents:
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11 planemo test --conda_auto_init --conda_auto_install --conda_dependency_resolution --conda_prefix /tmp/mc --galaxy_branch dev > planemo.out 2>&1