Mercurial > repos > lecorguille > msnbase_readmsdata

comparison msnbase_readmsdata.r @ 5:2a69f9923a70 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f0d42bca2f34c58c04b55e5990058d479c0ae639
author lecorguille
date Mon, 11 Feb 2019 05:48:13 -0500
parents 728ebc7ae7dd
children b6ef94529e50
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4:fd809bde6aec 5:2a69f9923a70
10 cat("\tSESSION INFO\n") 10 cat("\tSESSION INFO\n")
11 11
12 #Import the different functions 12 #Import the different functions
13 source_local <- function(fname){ argv <- commandArgs(trailingOnly=FALSE); base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)); source(paste(base_dir, fname, sep="/")) } 13 source_local <- function(fname){ argv <- commandArgs(trailingOnly=FALSE); base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)); source(paste(base_dir, fname, sep="/")) }
14 source_local("lib.r") 14 source_local("lib.r")
15 source_local("lib-xcms3.x.x.r")
16 15
17 pkgs <- c("MSnbase","batch") 16 pkgs <- c("MSnbase","batch")
18 loadAndDisplayPackages(pkgs) 17 loadAndDisplayPackages(pkgs)
19 cat("\n\n"); 18 cat("\n\n");
20 19