Mercurial > repos > lecorguille > msnbase_readmsdata

comparison msnbase_readmsdata.r @ 8:b6ef94529e50 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 8ed93601e09e1db2fbaef5af29d58464b639f2a8
author lecorguille
date Tue, 09 Apr 2019 12:10:17 -0400
parents 2a69f9923a70
children 0a0164b8c24d
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7:d7a7ef786fbe 8:b6ef94529e50
89 cat("\t\tphenoData\n") 89 cat("\t\tphenoData\n")
90 print(raw_data@phenoData@data) 90 print(raw_data@phenoData@data)
91 cat("\n\n") 91 cat("\n\n")
92 92
93 #saving R data in .Rdata file to save the variables used in the present tool 93 #saving R data in .Rdata file to save the variables used in the present tool
94 objects2save <- c("raw_data", "zipfile", "singlefile", "md5sumList", "sampleNamesList", "chromTIC", "chromBPI") 94 objects2save <- c("raw_data", "zipfile", "singlefile", "md5sumList", "sampleNamesList") #, "chromTIC", "chromBPI")
95 save(list=objects2save[objects2save %in% ls()], file="readmsdata.RData") 95 save(list=objects2save[objects2save %in% ls()], file="readmsdata.RData")
96 96
97 97
98 cat("\tDONE\n") 98 cat("\tDONE\n")