Mercurial > repos > lecorguille > msnbase_readmsdata

comparison msnbase_readmsdata.xml @ 8:b6ef94529e50 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 8ed93601e09e1db2fbaef5af29d58464b639f2a8
author lecorguille
date Tue, 09 Apr 2019 12:10:17 -0400
parents 32c20be7002f
children 86a20118e743
comparison
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7:d7a7ef786fbe 8:b6ef94529e50
40 <param name="input" value="faahKO_reduce.zip" ftype="zip" /> 40 <param name="input" value="faahKO_reduce.zip" ftype="zip" />
41 <assert_stdout> 41 <assert_stdout>
42 <has_text text="rowNames: faahKO_reduce/KO/ko15.CDF faahKO_reduce/KO/ko16.CDF" /> 42 <has_text text="rowNames: faahKO_reduce/KO/ko15.CDF faahKO_reduce/KO/ko16.CDF" />
43 <has_text text="faahKO_reduce/WT/wt15.CDF faahKO_reduce/WT/wt16.CDF" /> 43 <has_text text="faahKO_reduce/WT/wt15.CDF faahKO_reduce/WT/wt16.CDF" />
44 <has_text text="featureNames: F1.S0001 F1.S0002 ... F4.S1278 (5112 total)" /> 44 <has_text text="featureNames: F1.S0001 F1.S0002 ... F4.S1278 (5112 total)" />
45 <has_text text="fvarLabels: fileIdx spIdx ... spectrum (27 total)" /> 45 <has_text text="fvarLabels: fileIdx spIdx ... spectrum (28 total)" />
46 <has_text text="faahKO_reduce/KO/ko15.CDF ko15 KO" /> 46 <has_text text="faahKO_reduce/KO/ko15.CDF ko15 KO" />
47 <has_text text="faahKO_reduce/KO/ko16.CDF ko16 KO" /> 47 <has_text text="faahKO_reduce/KO/ko16.CDF ko16 KO" />
48 <has_text text="faahKO_reduce/WT/wt15.CDF wt15 WT" /> 48 <has_text text="faahKO_reduce/WT/wt15.CDF wt15 WT" />
49 <has_text text="faahKO_reduce/WT/wt16.CDF wt16 WT" /> 49 <has_text text="faahKO_reduce/WT/wt16.CDF wt16 WT" />
50 </assert_stdout> 50 </assert_stdout>
54 <param name="input" value="ko15.CDF" ftype="netcdf" /> 54 <param name="input" value="ko15.CDF" ftype="netcdf" />
55 <assert_stdout> 55 <assert_stdout>
56 <has_text text="rowNames: ./ko15.CDF" /> 56 <has_text text="rowNames: ./ko15.CDF" />
57 <has_text text="ko15.CDF" /> 57 <has_text text="ko15.CDF" />
58 <has_text text="featureNames: F1.S0001 F1.S0002 ... F1.S1278 (1278 total)" /> 58 <has_text text="featureNames: F1.S0001 F1.S0002 ... F1.S1278 (1278 total)" />
59 <has_text text="fvarLabels: fileIdx spIdx ... spectrum (27 total)" /> 59 <has_text text="fvarLabels: fileIdx spIdx ... spectrum (28 total)" />
60 <has_text text="./ko15.CDF ko15 ." /> 60 <has_text text="./ko15.CDF ko15 ." />
61 </assert_stdout> 61 </assert_stdout>
62 </test> 62 </test>
63 <!-- DISABLE FOR TRAVIS 63 <!-- DISABLE FOR TRAVIS
64 Useful to generate test-data for the further steps 64 Useful to generate test-data for the further steps
228 --------------------------------------------------- 228 ---------------------------------------------------
229 229
230 Changelog/News 230 Changelog/News
231 -------------- 231 --------------
232 232
233 .. _News: https://bioconductor.org/packages/release/bioc/news/MSnbase/NEWS
234
235 **Version 2.8.2.0 - 08/04/2019**
236
237 - UPGRADE: upgrade the MSnbase version from 2.4.0 to 2.8.2 (see MSnbase News_). Almost all the new features may not concern our usage of MSnbase.
233 238
234 **Version 2.4.0.0 - 29/03/2018** 239 **Version 2.4.0.0 - 29/03/2018**
235 240
236 - NEW: a new dedicated tool to read the raw data. This function was previously included in xcms.findChromPeaks. This way, you will now be able to display TICs and BPCs before xcms.findChromPeaks. 241 - NEW: a new dedicated tool to read the raw data. This function was previously included in xcms.findChromPeaks. This way, you will now be able to display TICs and BPCs before xcms.findChromPeaks.
237 242