Mercurial > repos > lecorguille > xcms_export_samplemetadata
changeset 3:10f7b1548200 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 37b0a6a7686f701e4bf00db97ae2c1b82cd6e989
| author | lecorguille |
|---|---|
| date | Fri, 09 Nov 2018 15:20:18 -0500 |
| parents | 942ffa3c38b8 |
| children | 8c62030a1136 |
| files | lib.r repository_dependencies.xml |
| diffstat | 2 files changed, 7 insertions(+), 4 deletions(-) [+] |
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--- a/lib.r Tue Oct 09 15:50:03 2018 -0400 +++ b/lib.r Fri Nov 09 15:20:18 2018 -0500 @@ -198,6 +198,9 @@ variableMetadata <- formatIonIdentifiers(variableMetadata, numDigitsRT=numDigitsRT, numDigitsMZ=numDigitsMZ) dataMatrix <- naTOzeroDataMatrix(dataMatrix, naTOzero) + # FIX: issue when the vector at peakidx is too long and is written in a new line during the export + variableMetadata[,"peakidx"] <- vapply(variableMetadata[,"peakidx"], FUN = paste, FUN.VALUE = character(1), collapse = ",") + write.table(variableMetadata, file=variableMetadataOutput,sep="\t",quote=F,row.names=F) write.table(dataMatrix, file=dataMatrixOutput,sep="\t",quote=F,row.names=F)
--- a/repository_dependencies.xml Tue Oct 09 15:50:03 2018 -0400 +++ b/repository_dependencies.xml Fri Nov 09 15:20:18 2018 -0500 @@ -1,5 +1,5 @@ -<?xml version="1.0"?> +<?xml version="1.0" ?> <repositories> - <repository changeset_revision="7800ba9a4c1e" name="no_unzip_datatype" owner="lecorguille" toolshed="https://toolshed.g2.bx.psu.edu" /> - <repository changeset_revision="544f6d2329ac" name="rdata_xcms_datatypes" owner="lecorguille" toolshed="https://toolshed.g2.bx.psu.edu" /> -</repositories> + <repository changeset_revision="7800ba9a4c1e" name="no_unzip_datatype" owner="lecorguille" toolshed="https://toolshed.g2.bx.psu.edu"/> + <repository changeset_revision="544f6d2329ac" name="rdata_xcms_datatypes" owner="lecorguille" toolshed="https://toolshed.g2.bx.psu.edu"/> +</repositories> \ No newline at end of file