Mercurial > repos > lecorguille > xcms_group
comparison planemo_test.sh @ 5:0306a96cc446 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29
author | lecorguille |
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date | Mon, 25 Apr 2016 11:14:27 -0400 |
parents | 2db1d1d0f131 |
children |
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4:2db1d1d0f131 | 5:0306a96cc446 |
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1 planemo conda_init | 1 # Example of planemo command to launch test |
2 planemo conda_install . | |
3 planemo test --install_galaxy --conda_dependency_resolution | |
4 | |
5 #All 2 test(s) executed passed. | |
6 #abims_xcms_group[0]: passed | |
7 #abims_xcms_group[1]: passed | |
8 | 2 |
9 | 3 |
4 # -- Use of installed package environments | |
5 # after having installing package on a local galaxy instance | |
10 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh | 6 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh |
11 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh | 7 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh |
12 planemo test --install_galaxy | 8 planemo test --install_galaxy |
13 | 9 |
14 #All 2 test(s) executed passed. | 10 #All 2 test(s) executed passed. |
15 #abims_xcms_group[0]: passed | 11 #abims_xcms_group[0]: passed |
16 #abims_xcms_group[1]: passed | 12 #abims_xcms_group[1]: passed |
17 | 13 |
18 | 14 |
15 # -- Use of conda dependencies | |
16 planemo conda_init --conda_prefix /tmp/mc | |
17 planemo conda_install --conda_prefix /tmp/mc . | |
18 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution | |
19 | |
20 #All 2 test(s) executed passed. | |
21 #abims_xcms_group[0]: passed | |
22 #abims_xcms_group[1]: passed | |
23 | |
24 | |
25 # -- Use of shed_test | |
19 planemo shed_test --install_galaxy -t testtoolshed | 26 planemo shed_test --install_galaxy -t testtoolshed |
20 | 27 |
21 #All 2 test(s) executed passed. | 28 #All 2 test(s) executed passed. |
22 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.0.5[0]: passed | 29 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.0.5[0]: passed |
23 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.0.5[1]: passed | 30 #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.0.5[1]: passed |