Mercurial > repos > lecorguille > xcms_group

comparison README.rst @ 14:833d2c821d9c draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 9f72e947d9c241d11221cad561f3525d27231857
author lecorguille
date Tue, 18 Sep 2018 16:11:06 -0400
parents 13558e8a4778
children 7a19925478e8
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13:13558e8a4778 14:833d2c821d9c
1 1
2 Changelog/News 2 Changelog/News
3 -------------- 3 --------------
4 4
5 **Version 3.0.0.0 - 08/03/2018**
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7 - UPGRADE: upgrade the xcms version from 1.46.0 to 3.0.0. So refactoring of a lot of underlying codes and methods. Some parameters may have been renamed.
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9 - NEW: a bunch of new options: PeakDensity.minSamples), MzClust.minSamples)
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11 - NEW: a new density plot
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13 - IMPROVEMENT: the advanced options are now in sections. It will allow you to access to all the parameters and to know their default values.
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5 **Version 2.1.1 - 29/11/2017** 16 **Version 2.1.1 - 29/11/2017**
6 17
7 - BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C 18 - BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C
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8 20
9 **Version 2.1.0 - 07/02/2017** 21 **Version 2.1.0 - 07/02/2017**
10 22
11 - IMPROVEMENT: Add an option to export the peak list at this step without have to wait camara.annotate 23 - IMPROVEMENT: Add an option to export the peak list at this step without have to wait camara.annotate
12 24
13 - IMPROVEMENT: xcms.group can deal with merged individual data from "xcms.xcmsSet Merger" 25 - IMPROVEMENT: xcms.group can deal with merged individual data from "xcms.xcmsSet Merger"
14 26
15 - BUGFIX: the default value of "density" -> "Maximum number of groups to identify in a single m/z slice" which was of 5 have been changed to fix with the XMCS default values to 50 27 - BUGFIX: the default value of "density" -> "Maximum number of groups to identify in a single m/z slice" which was of 5 have been changed to fix with the XMCS default values to 50
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17 **Version 2.0.6 - 06/07/2016** 30 **Version 2.0.6 - 06/07/2016**
18 31
19 - UPGRADE: upgrate the xcms version from 1.44.0 to 1.46.0 32 - UPGRADE: upgrate the xcms version from 1.44.0 to 1.46.0
20 33
21 **Version 2.0.5 04/04/2016** 34
35 **Version 2.0.5 - 04/04/2016**
22 36
23 - TEST: refactoring to pass planemo test using conda dependencies 37 - TEST: refactoring to pass planemo test using conda dependencies
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25 39
26 **Version 2.0.4 - 10/02/2016** 40 **Version 2.0.4 - 10/02/2016**