Mercurial > repos > lecorguille > xcms_group

diff abims_xcms_group.xml @ 5:0306a96cc446 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29
author lecorguille
date Mon, 25 Apr 2016 11:14:27 -0400
parents 2db1d1d0f131
children 5d80e7511dfb
line wrap: on
line diff
--- a/abims_xcms_group.xml	Fri Apr 08 10:39:09 2016 -0400
+++ b/abims_xcms_group.xml	Mon Apr 25 11:14:27 2016 -0400
@@ -98,7 +98,7 @@
     </outputs>
 
     <tests>
-        <test>
+        <!--<test>
             <param name="image" value="xset.RData"/>
             <param name="methods|method" value="density"/>
             <param name="methods|bw" value="5"/>
@@ -116,8 +116,27 @@
                     <has_text text="Sample classes: bio, blank" />
                 </assert_contents>
             </output>
+        </test>-->
+        <test>
+            <param name="image" value="faahKO.xset.RData"/>
+            <param name="methods|method" value="density"/>
+            <param name="methods|bw" value="5"/>
+            <param name="methods|minfrac" value="0.3"/>
+            <param name="methods|mzwid" value="0.01"/>
+            <param name="methods|density_options|option" value="show"/>
+            <param name="methods|density_options|max" value="50"/>
+            <output name="log">
+                <assert_contents>
+                    <has_text text="object with 4 samples" />
+                    <has_text text="Time range: 2506.1-4477.9 seconds (41.8-74.6 minutes)" />
+                    <has_text text="Mass range: 200.1-600 m/z" />
+                    <has_text text="Peaks: 9251 (about 2313 per sample)" />
+                    <has_text text="Peak Groups: 8275" />
+                    <has_text text="Sample classes: KO, WT" />
+                </assert_contents>
+            </output>
         </test>
-        <test>
+        <!--<test>
             <param name="image" value="xset.group.retcor.RData"/>
             <param name="methods|method" value="density"/>
             <param name="methods|bw" value="5"/>
@@ -135,6 +154,25 @@
                     <has_text text="Sample classes: bio, blank" />
                 </assert_contents>
             </output>
+        </test>-->
+        <test>
+            <param name="image" value="faahKO.xset.group.retcor.RData"/>
+            <param name="methods|method" value="density"/>
+            <param name="methods|bw" value="5"/>
+            <param name="methods|minfrac" value="0.3"/>
+            <param name="methods|mzwid" value="0.01"/>
+            <param name="methods|density_options|option" value="show"/>
+            <param name="methods|density_options|max" value="50"/>
+            <output name="log">
+                <assert_contents>
+                    <has_text text="object with 4 samples" />
+                    <has_text text="Time range: 2507.7-4481.7 seconds (41.8-74.7 minutes)" />
+                    <has_text text="Mass range: 200.1-600 m/z" />
+                    <has_text text="Peaks: 9251 (about 2313 per sample)" />
+                    <has_text text="Peak Groups: 8157" />
+                    <has_text text="Sample classes: KO, WT" />
+                </assert_contents>
+            </output>
         </test>
     </tests>