Mercurial > repos > lecorguille > xcms_group

changeset 6:982d690f4e8c draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 960f403303e1691bdd6137c46895feb333b36a82
author lecorguille
date Mon, 04 Jul 2016 08:46:02 -0400
parents 0306a96cc446
children 5c37c1d214a2
files macros.xml tool_dependencies.xml
diffstat 2 files changed, 29 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Mon Apr 25 11:14:27 2016 -0400
+++ b/macros.xml	Mon Jul 04 08:46:02 2016 -0400
@@ -3,9 +3,9 @@
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="3.1.2">R</requirement>
-	    <requirement type="package" version="0.4_1">r-snow</requirement>
-            <requirement type="package" version="1.44.0">bioconductor-xcms</requirement>
-	    <requirement type="package" version="1.1_4">r-batch</requirement>
+            <requirement type="package" version="0.4_1">r-snow</requirement>
+            <requirement type="package" version="1.46.0">bioconductor-xcms</requirement>
+            <requirement type="package" version="1.1_4">r-batch</requirement>
         </requirements>
     </xml>
     <xml name="stdio">
@@ -26,6 +26,30 @@
         sh -c "exit \$return"
     </token>
 
+    <!-- zipfile load for planemo test -->
+
+    <token name="@COMMAND_ZIPFILE_LOAD@">
+        #if $zipfile_load_conditional.zip_file:
+            zipfile $zipfile_load_conditional.zip_file
+        #end if
+    </token>
+
+    <xml name="zipfile_load">
+        <conditional name="zipfile_load_conditional">
+            <param name="zipfile_load_select" type="select" label="Resubmit your zip file" help="Use only if you get a message which say that your original zip file have been deleted on the server." >
+                <option value="no" >no need</option>
+                <option value="yes" selected="peakgroups">yes</option>
+            </param>
+            <when value="no">
+            </when>
+            <when value="yes">
+                <param name="zip_file" type="data" format="no_unzip.zip,zip" label="Zip file" />
+            </when>
+        </conditional>
+    </xml>
+
+
+
     <token name="@HELP_AUTHORS@">
 .. class:: infomark
 
--- a/tool_dependencies.xml	Mon Apr 25 11:14:27 2016 -0400
+++ b/tool_dependencies.xml	Mon Jul 04 08:46:02 2016 -0400
@@ -3,7 +3,7 @@
     <package name="R" version="3.1.2">
         <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
-    <package name="bioconductor-xcms" version="1.44.0">
-        <repository changeset_revision="58ebb405a3d6" name="package_bioconductor_xcms_1_44_0" owner="lecorguille" toolshed="https://toolshed.g2.bx.psu.edu" />
+    <package name="bioconductor-xcms" version="1.46.0">
+        <repository changeset_revision="779207ed5674" name="package_bioconductor_xcms_1_46_0" owner="lecorguille" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>