Mercurial > repos > lecorguille > xcms_plot_chromatogram
diff macros.xml @ 0:c749bfd3410e draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 9f72e947d9c241d11221cad561f3525d27231857
author | lecorguille |
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date | Tue, 18 Sep 2018 16:06:05 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Tue Sep 18 16:06:05 2018 -0400 @@ -0,0 +1,52 @@ +<?xml version="1.0"?> +<macros> + <xml name="stdio"> + <stdio> + <exit_code range="1" level="fatal" /> + </stdio> + </xml> + + <!-- COMMAND --> + <token name="@COMMAND_RSCRIPT@">LC_ALL=C Rscript $__tool_directory__/</token> + + <token name="@COMMAND_LOG_EXIT@"> + ; + return=\$?; + cat 'log.txt'; + sh -c "exit \$return" + </token> + + <!-- INPUT_VALIDATORS --> + <xml name="input_validator_range_integer"> + <validator type="regex" message="The format is 'min,max'" >[0-9]+ *, *[0-9]+</validator> + </xml> + + <xml name="input_validator_range_float"> + <validator type="regex" message="The format is 'min,max'" >[0-9]+\.?[0-9]* *, *[0-9]+\.?[0-9]*</validator> + </xml> + + <xml name="input_validator_list_integer"> + <validator type="regex" message="The format is '1,2,4,6'" >[0-9, ]+</validator> + </xml> + + + <token name="@INPUT_IMAGE_LABEL@">RData file</token> + <token name="@INPUT_IMAGE_HELP@">It contains a xcms3::XCMSnExp object (named xdata)</token> + + + <!-- MISC --> + <token name="@HELP_AUTHORS_WRAPPERS@"> + +.. class:: infomark + +**Galaxy integration** ABiMS TEAM - SU/CNRS - Station biologique de Roscoff and Yann Guitton - LABERCA +Part of Workflow4Metabolomics.org [W4M] + + | Contact support@workflow4metabolomics.org for any questions or concerns about the Galaxy implementation of this tool. + + </token> + + <xml name="citation_w4m"> + <citation type="doi">10.1093/bioinformatics/btu813</citation> + </xml> +</macros>