diff xcms_plot_chromatogram.xml @ 10:dbd877060ac3 draft

"planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f1caf2a3bf23cf319a75dd12c86402555dd02617"
author workflow4metabolomics
date Wed, 12 Feb 2020 08:30:06 -0500
parents 0290cd6b3354
children 37d31fd64eb4
line wrap: on
line diff
--- a/xcms_plot_chromatogram.xml	Mon Jun 03 07:12:50 2019 -0400
+++ b/xcms_plot_chromatogram.xml	Wed Feb 12 08:30:06 2020 -0500
@@ -1,11 +1,10 @@
-<tool id="xcms_plot_chromatogram" name="xcms plot chromatogram" version="@WRAPPER_VERSION@.0">
+<tool id="xcms_plot_chromatogram" name="xcms plot chromatogram" version="@TOOL_VERSION@.0">
     <description>Plots base peak intensity chromatogram (BPI) and total ion current chromatogram (TIC) from MSnbase or xcms experiment(s)</description>
 
     <macros>
         <import>macros.xml</import>
         <import>macros_xcms.xml</import>
     </macros>
-
     <expand macro="requirements"/>
     <expand macro="stdio"/>
 
@@ -38,8 +37,8 @@
             <param name="images" value="faahKO-single.xset.merged.group.retcor.RData" ftype="rdata"/>
             <expand macro="test_file_load_single"/>
             <param name="sampleMetadata" value="sampleMetadata.tab" ftype="tabular"/>
-            <output name="ticsPdf" value="TICs.pdf" ftype="pdf" compare="sim_size" delta="600" />
-            <output name="bpisPdf" value="BPIs.pdf" ftype="pdf" compare="sim_size" delta="600" />
+            <output name="ticsPdf" value="TICs.pdf" ftype="pdf" compare="sim_size" delta="5000" />
+            <output name="bpisPdf" value="BPIs.pdf" ftype="pdf" compare="sim_size" delta="5000" />
         </test>
         <!-- DISABLE FOR TRAVIS
         <test>
@@ -105,9 +104,9 @@
 
 .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS
 
-**Version 3.4.4.0 - 08/02/2019**
+@HELP_XCMS_NEWVERSION_3610@
 
-- UPGRADE: upgrade the xcms version from 3.0.0 to 3.4.4 (see XCMS News_)
+@HELP_XCMS_NEWVERSION_3440@
 
 **Version 3.0.0.0 - 07/03/2018**