Mercurial > repos > lecorguille > xcms_summary

comparison xcms_summary.r @ 7:ed8d80fc927c draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29
author lecorguille
date Mon, 25 Apr 2016 11:15:29 -0400
parents ca7c9a6da2c6
children 27e7da5f6848
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6:ca7c9a6da2c6 7:ed8d80fc927c
10 #CAMERA.r 10 #CAMERA.r
11 argBlacklist=c(argBlacklist,"dataMatrixOutput","variableMetadataOutput","new_file_path") 11 argBlacklist=c(argBlacklist,"dataMatrixOutput","variableMetadataOutput","new_file_path")
12 12
13 # ----- PACKAGE ----- 13 # ----- PACKAGE -----
14 14
15 pkgs=c("parallel","BiocGenerics", "Biobase", "Rcpp", "mzR", "tcltk","igraph", "xcms","snow","CAMERA","multtest","batch") 15 pkgs=c("parallel","BiocGenerics", "Biobase", "Rcpp", "mzR", "igraph", "xcms","CAMERA","batch")
16 for(pkg in pkgs) { 16 for(pkg in pkgs) {
17 cat(pkg,"\n")
17 suppressPackageStartupMessages( stopifnot( library(pkg, quietly=TRUE, logical.return=TRUE, character.only=TRUE))) 18 suppressPackageStartupMessages( stopifnot( library(pkg, quietly=TRUE, logical.return=TRUE, character.only=TRUE)))
18 } 19 }
19 20
20 21
21 # ----- FUNCTION ----- 22 # ----- FUNCTION -----