Mercurial > repos > lecorguille > xcms_xcmsset

comparison test-data/xset.log.txt @ 0:054e4681667c draft

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author lecorguille
date Fri, 07 Aug 2015 10:49:35 -0400
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-1:000000000000 0:054e4681667c
1 PACKAGE INFO
2 parallel 3.1.1
3 BiocGenerics 0.12.1
4 Biobase 2.26.0
5 Rcpp 0.11.5
6 mzR 2.0.0
7 igraph 0.7.1
8 xcms 1.42.0
9 snow 0.3.13
10 batch 1.1.4
11
12
13 ARGUMENTS INFO
14 zipfile /w/galaxy/galaxy4metabolomics/galaxy-dist/database/files/041/dataset_41794.dat
15 xfunction xcmsSet
16 nSlaves 8
17 method matchedFilter
18 step 0.01
19 fwhm 4
20 max 50
21 snthresh 1
22 steps 2
23
24
25 INFILE PROCESSING INFO
26
27
28 MAIN PROCESSING INFO
29 Starting snow cluster with 8 local sockets.
30 Detecting features in file # 1 : HU_neg_028.mzXML
31 Detecting features in file # 2 : HU_neg_060.mzXML
32 Detecting features in file # 3 : HU_neg_051.mzXML
33 Detecting features in file # 4 : HU_neg_017.mzXML
34 Detecting features in file # 5 : HU_neg_034.mzXML
35 Detecting features in file # 6 : Blanc09.mzXML
36 Detecting features in file # 7 : Blanc06.mzXML
37 Detecting features in file # 8 : Blanc12.mzXML
38 Detecting features in file # 9 : Blanc04.mzXML
39
40
41 XSET OBJECT INFO
42 An "xcmsSet" object with 9 samples
43
44 Time range: 0.7-1140 seconds (0-19 minutes)
45 Mass range: 50.0019-999.9863 m/z
46 Peaks: 135846 (about 15094 per sample)
47 Peak Groups: 0
48 Sample classes: bio, blank
49
50 Profile settings: method = bin
51 step = 0.01
52
53 Memory usage: 13.8 MB
54
55
56 DONE