Mercurial > repos > lecorguille > xcms_xcmsset

comparison abims_xcms_xcmsSet.xml @ 7:451ff602a957 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29
author lecorguille
date Mon, 25 Apr 2016 11:14:02 -0400
parents 0888f7ef739a
children 69eb0fc05837
comparison
equal deleted inserted replaced
6:0888f7ef739a 7:451ff602a957
181 <data name="bpcsRawPdf" format="pdf" label="xset.BPCs_raw.pdf" /> 181 <data name="bpcsRawPdf" format="pdf" label="xset.BPCs_raw.pdf" />
182 <data name="log" format="txt" label="xset.log.txt" /> 182 <data name="log" format="txt" label="xset.log.txt" />
183 </outputs> 183 </outputs>
184 184
185 <tests> 185 <tests>
186 <test> 186 <!--<test>
187 <param name="inputs|input" value="zip_file" /> 187 <param name="inputs|input" value="zip_file" />
188 <param name="inputs|zip_file" value="sacuri_dir_root.zip" ftype="zip" /> 188 <param name="inputs|zip_file" value="sacuri_dir_root.zip" ftype="zip" />
189 <param name="methods|method" value="matchedFilter" /> 189 <param name="methods|method" value="matchedFilter" />
190 <param name="methods|step" value="0.01" /> 190 <param name="methods|step" value="0.01" />
191 <param name="methods|fwhm" value="4" /> 191 <param name="methods|fwhm" value="4" />
201 <has_text text="Peaks: 59359 (about 14840 per sample)" /> 201 <has_text text="Peaks: 59359 (about 14840 per sample)" />
202 <has_text text="Peak Groups: 0" /> 202 <has_text text="Peak Groups: 0" />
203 <has_text text="Sample classes: bio, blank" /> 203 <has_text text="Sample classes: bio, blank" />
204 </assert_contents> 204 </assert_contents>
205 </output> 205 </output>
206 </test> 206 </test>
207 <test> 207 <test>
208 <param name="inputs|input" value="zip_file" /> 208 <param name="inputs|input" value="zip_file" />
209 <param name="inputs|zip_file" value="sacuri_current_root.zip" ftype="zip" /> 209 <param name="inputs|zip_file" value="sacuri_current_root.zip" ftype="zip" />
210 <param name="methods|method" value="centWave" /> 210 <param name="methods|method" value="centWave" />
211 <param name="methods|ppm" value="25" /> 211 <param name="methods|ppm" value="25" />
218 <has_text text="Peaks: 1535 (about 384 per sample)" /> 218 <has_text text="Peaks: 1535 (about 384 per sample)" />
219 <has_text text="Peak Groups: 0" /> 219 <has_text text="Peak Groups: 0" />
220 <has_text text="Sample classes: bio, blank" /> 220 <has_text text="Sample classes: bio, blank" />
221 </assert_contents> 221 </assert_contents>
222 </output> 222 </output>
223 </test>-->
224 <test>
225 <param name="inputs|input" value="zip_file" />
226 <param name="inputs|zip_file" value="faahKO_reduce.zip" ftype="zip" />
227 <param name="methods|method" value="centWave" />
228 <param name="methods|ppm" value="25" />
229 <param name="methods|peakwidth" value="20,50" />
230 <output name="log">
231 <assert_contents>
232 <has_text text="object with 4 samples" />
233 <has_text text="Time range: 2506.1-4477.9 seconds (41.8-74.6 minutes)" />
234 <has_text text="Mass range: 200.1-600 m/z" />
235 <has_text text="Peaks: 9251 (about 2313 per sample)" />
236 <has_text text="Peak Groups: 0" />
237 <has_text text="Sample classes: KO, WT" />
238 </assert_contents>
239 </output>
223 </test> 240 </test>
224 </tests> 241 </tests>
225 242
226 <help><![CDATA[ 243 <help><![CDATA[
227 244