Mercurial > repos > lecorguille > xcms_xcmsset
comparison xcms_xcmsSet.r @ 21:87df3692c68d draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f0d42bca2f34c58c04b55e5990058d479c0ae639
author | lecorguille |
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date | Mon, 11 Feb 2019 05:51:25 -0500 |
parents | b62808a2a008 |
children | 9a0ca3f3a847 |
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20:41cf6f56d1b6 | 21:87df3692c68d |
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10 cat("\tSESSION INFO\n") | 10 cat("\tSESSION INFO\n") |
11 | 11 |
12 #Import the different functions | 12 #Import the different functions |
13 source_local <- function(fname){ argv <- commandArgs(trailingOnly=FALSE); base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)); source(paste(base_dir, fname, sep="/")) } | 13 source_local <- function(fname){ argv <- commandArgs(trailingOnly=FALSE); base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)); source(paste(base_dir, fname, sep="/")) } |
14 source_local("lib.r") | 14 source_local("lib.r") |
15 source_local("lib-xcms3.x.x.r") | |
16 | 15 |
17 pkgs <- c("xcms","batch") | 16 pkgs <- c("xcms","batch") |
18 loadAndDisplayPackages(pkgs) | 17 loadAndDisplayPackages(pkgs) |
19 cat("\n\n"); | 18 cat("\n\n"); |
20 | 19 |