Mercurial > repos > lecorguille > xcms_xcmsset

comparison README.rst @ 13:c934dd5c49a9 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 4897a06ef248e2e74e57a496dd68adbda3c828f1
author lecorguille
date Wed, 29 Nov 2017 09:45:19 -0500
parents 15646e937936
children b62808a2a008
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12:15646e937936 13:c934dd5c49a9
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12 The [Dynamic Destination Mapping](https://galaxyproject.org/admin/config/jobs/#dynamic-destination-mapping) allow Galaxy to choose a destination at runtime based on factors such as the job inputs, user submitting the job, cluster status, etc... 12 The [Dynamic Destination Mapping](https://galaxyproject.org/admin/config/jobs/#dynamic-destination-mapping) allow Galaxy to choose a destination at runtime based on factors such as the job inputs, user submitting the job, cluster status, etc...
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14 **How** 14 **How**
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16 - The file `destinations_input_type.py` (shiped with this tool) must be place in `lib/galaxy/jobs/rules/` 16 1. The file [`destinations_input_type.py`](https://raw.githubusercontent.com/workflow4metabolomics/xcms/master/galaxy/xcms_xcmsset/destinations_input_type.py) (shiped with this tool) must be place in `lib/galaxy/jobs/rules/`
17 - The `job_conf.xml` must be inspired by the `job_conf.xml.sample` shiped with this tool 17 2. The `job_conf.xml` must be inspired by the [`job_conf.xml.sample`](https://github.com/workflow4metabolomics/xcms/blob/master/galaxy/xcms_xcmsset/job_conf.xml.sample) shiped with this tool
18 - The final destination names must match between the `job_conf.xml` and the `destinations_input_type.py` 18 3. The final destination names must match between the `job_conf.xml` and the `destinations_input_type.py`
19 - Restart Galaxy 19 4. Restart Galaxy
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22 Changelog/News 22 Changelog/News
23 -------------- 23 --------------
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25 **Version 2.1.1 - 29/11/2017**
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27 - BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C
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25 **Version 2.1.0 - 22/02/2017** 29 **Version 2.1.0 - 22/02/2017**
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27 - NEW: The W4M tools will be able now to take as input a single file. It will allow to submit in parallel several files and merge them afterward using "xcms.xcmsSet Merger" before "xcms.group". 31 - NEW: The W4M tools will be able now to take as input a single file. It will allow to submit in parallel several files and merge them afterward using "xcms.xcmsSet Merger" before "xcms.group".
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