Mercurial > repos > lecorguille > xcms_xcmsset

comparison abims_xcms_xcmsSet.xml @ 13:c934dd5c49a9 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 4897a06ef248e2e74e57a496dd68adbda3c828f1
author lecorguille
date Wed, 29 Nov 2017 09:45:19 -0500
parents 15646e937936
children b62808a2a008
comparison
equal deleted inserted replaced
12:15646e937936 13:c934dd5c49a9
1 <tool id="abims_xcms_xcmsSet" name="xcms.xcmsSet" version="2.1.0"> 1 <tool id="abims_xcms_xcmsSet" name="xcms.xcmsSet" version="2.1.1">
2 <description>Filtration and Peak Identification using xcmsSet function from xcms R package to preprocess LC/MS data for relative quantification and statistical analysis </description> 2 <description>Filtration and Peak Identification using xcmsSet function from xcms R package to preprocess LC/MS data for relative quantification and statistical analysis </description>
3 3
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
555 --------------------------------------------------- 555 ---------------------------------------------------
556 556
557 Changelog/News 557 Changelog/News
558 -------------- 558 --------------
559 559
560 **Version 2.1.1 - 29/11/2017**
561
562 - BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C
563
560 **Version 2.1.0 - 22/02/2017** 564 **Version 2.1.0 - 22/02/2017**
561 565
562 - NEW: The W4M tools will be able now to take as input a single file. It will allow to submit in parallel several files and merge them afterward using "xcms.xcmsSet Merger" before "xcms.group". 566 - NEW: The W4M tools will be able now to take as input a single file. It will allow to submit in parallel several files and merge them afterward using "xcms.xcmsSet Merger" before "xcms.group".
563 567
564 - BUGFIX: the default value of "matchedFilter" -> "Step size to use for profile generation" which was of 0.01 have been changed to fix with the XMCS default values to 0.1 568 - BUGFIX: the default value of "matchedFilter" -> "Step size to use for profile generation" which was of 0.01 have been changed to fix with the XMCS default values to 0.1
591 - UPDATE: refactoring of internal management of inputs/outputs 595 - UPDATE: refactoring of internal management of inputs/outputs
592 596
593 - TEST: refactoring to feed the new report tool 597 - TEST: refactoring to feed the new report tool
594 598
595 599
596 **Version 2.0.2 - 18/01/2016 600 **Version 2.0.2 - 18/01/2016**
597 601
598 - BUGFIX: Some zip files were tag as "corrupt" by R. We have changed the extraction mode to deal with thoses cases. 602 - BUGFIX: Some zip files were tag as "corrupt" by R. We have changed the extraction mode to deal with thoses cases.
599 603
600 604
601 **Version 2.0.2 - 09/10/2015** 605 **Version 2.0.2 - 09/10/2015**