Mercurial > repos > lecorguille > xcms_xcmsset

comparison job_conf.xml.sample @ 13:c934dd5c49a9 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 4897a06ef248e2e74e57a496dd68adbda3c828f1
author lecorguille
date Wed, 29 Nov 2017 09:45:19 -0500
parents 15646e937936
children b62808a2a008
comparison
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12:15646e937936 13:c934dd5c49a9
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <!-- A sample job config that explicitly configures job running the way it is configured by default (if there is no explicit config). --> 2 <!-- A sample job config that explicitly configures job running the way it is configured by default (if there is no explicit config). -->
3 <job_conf> 3 <job_conf>
4 <plugins> 4 <plugins>
5 <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/>
6 <plugin id="sge" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner" type="runner"/> 5 <plugin id="sge" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner" type="runner"/>
7 <plugin id="dynamic" type="runner" > 6 <plugin id="dynamic" type="runner" >
8 <param id="rules_module">galaxy.jobs.rules</param> 7 <param id="rules_module">galaxy.jobs.rules</param>
9 </plugin> 8 </plugin>
10 </plugins> 9 </plugins>
11 <handlers> 10 <handlers>
12 <handler id="main"/> 11 <handler id="main"/>
13 </handlers> 12 </handlers>
14 <destinations default="sge_default"> 13 <destinations default="sge_default">
15 <destination id="local" runner="local"/>
16 <destination id="sge_default" runner="sge"> 14 <destination id="sge_default" runner="sge">
17 <param id="nativeSpecification">-V -w n -q galaxy.q</param> 15 <param id="nativeSpecification">-V -w n -q galaxy.q</param>
18 </destination> 16 </destination>
19 17
20 <destination id="thread1-men_free10" runner="sge"> 18 <destination id="thread1-men_free10" runner="sge">
21 <param id="nativeSpecification">-V -w n -q galaxy.q -pe thread 1 -R y -l mem_free=10G </param> 19 <param id="nativeSpecification">-V -w n -q galaxy.q -pe thread 1 -R y -l mem_free=10G </param>
22 </destination> 20 </destination>
23 <destination id="thread4-men_free10" runner="sge"> 21 <destination id="thread4-men_free10" runner="sge">
24 <param id="nativeSpecification">-V -w n -q galaxy.q -pe thread 4 -R y -l mem_free=10G </param> 22 <param id="nativeSpecification">-V -w n -q galaxy.q -pe thread 4 -R y -l mem_free=10G </param>
29 <param id="function">input_type</param> 27 <param id="function">input_type</param>
30 </destination> 28 </destination>
31 </destinations> 29 </destinations>
32 <tools> 30 <tools>
33 <tool destination="python_destination_input_type" id="abims_xcms_xcmsSet" /> 31 <tool destination="python_destination_input_type" id="abims_xcms_xcmsSet" />
34 <tool destination="local" id="upload1"/>
35 </tools> 32 </tools>
36 </job_conf> 33 </job_conf>